Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M21
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   1.7  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   5.1  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       24   6.8  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = -2

Query: 239 LFLFFVINYHMFSF*FVILIAFKVYFIE*LIYNVICHYFVKYYRIIVKKYLLNVIAIIKS 60
           LF FF++ +  FSF F  L      FI       I H F+ ++ + V  +L  + ++   
Sbjct: 118 LFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILH-FLFFFFLCVCVFLSFLFSLSHL 176

Query: 59  MKLFVLYM 36
           + L +L++
Sbjct: 177 LSLAILFL 184


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 237 FSIFCY*LSYV*FLICYFNCFQSIFY 160
           F I  + ++++  L+ YF C  S+FY
Sbjct: 166 FPICLFVINHILILLGYFQCSYSVFY 191


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 255 NLLCTSMYVSFIIFLCYKFNDYCINNILFTLRYI 356
           N+  +S  +SF+I++ Y F+   ++  + T  YI
Sbjct: 27  NIQVSSSLLSFLIYILYTFSISGLSTFVITKYYI 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,513
Number of Sequences: 5004
Number of extensions: 18293
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)