Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M21
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    29   0.82 
Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z49867-2|CAA90028.1|  346|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical p...    26   7.6  

>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 152 LIYNVICHYFVKYYRIIVKKYLLNVIAI-IKSMKLFVLYMLSRWDLEPNP 6
           L+Y++   YF+  Y  I+   + N I + ++ M++  ++ + RW ++P P
Sbjct: 87  LMYSIAILYFIYLYAYILYPIVFNTILLYLERMRVLNVHTVKRW-VQPEP 135


>Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical
           protein E03H4.5 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 224 QKIEKGFTMCKSTLYFY 274
           +K+EKG TMC   +Y+Y
Sbjct: 155 KKVEKGLTMCVLPVYYY 171


>Z49867-2|CAA90028.1|  346|Caenorhabditis elegans Hypothetical
           protein C33D3.4 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 93  LFNDYSIIFNEIMTDHIID*SFNKIY 170
           +F+  +IIFN+I  +H +D  +NKI+
Sbjct: 87  IFSILAIIFNKIEKNHTLDDLWNKIH 112


>Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical
           protein T09E11.6 protein.
          Length = 494

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 43  STNNFIDLIIAITFSKYFLTIIL 111
           S N ++ LIIA +F  YFL I+L
Sbjct: 18  SLNRWLLLIIAASFISYFLVILL 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,217,126
Number of Sequences: 27780
Number of extensions: 99127
Number of successful extensions: 233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)