Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M19
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0279 + 19724662-19724700,19725344-19726369                       28   2.7  
07_01_0873 - 7257016-7257957,7260083-7260262                           27   6.3  

>05_04_0279 + 19724662-19724700,19725344-19726369
          Length = 354

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 169 RNAMKINMAVDESVCNYKRVPSNRYQCFIND 261
           R  +K++  V  SV NY+R P +RY C  +D
Sbjct: 139 RRFVKLSKGVVVSV-NYRRAPEHRYPCAYDD 168


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 145 ETKRCQHFRNAMKINMAVDESVCNYKRVPSNRYQCFINDISNCSNID 285
           E K C  FR A+ +  A+ + + N+      RY+  + ++ +  N D
Sbjct: 231 EVKACDPFRIAVMVECALFQKLGNFNGPNKQRYRSLMFNLKDDHNTD 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,626,511
Number of Sequences: 37544
Number of extensions: 91071
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)