Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M18
(366 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 1.2
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 2.8
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 25 3.7
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 3.7
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 4.9
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 4.9
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 4.9
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 24 6.4
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 24 6.4
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 24 6.4
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 24 6.4
SPBC119.18 |||mitochondrial distribution and morphology protein ... 24 8.5
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 24 8.5
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 24 8.5
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 95 YKDVLSKAFENNNIDLLDSFTKNANES 175
YKD+ S A E+ N DL+ SF A S
Sbjct: 965 YKDICSLASESGNPDLIYSFLSIAGNS 991
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.4 bits (53), Expect = 2.8
Identities = 13/67 (19%), Positives = 31/67 (46%)
Frame = +2
Query: 62 DKLGFDELRSKYKDVLSKAFENNNIDLLDSFTKNANESDRKAAMDQAFRDKLLELLAEES 241
+ LG+ + S KDV+ + L+ + N NE + ++ L +A ++
Sbjct: 66 ESLGYKDFDSFLKDVIPDSVRTPESQLMAFGSVNPNEKNPPVNYSESEFTTLANNVANQN 125
Query: 242 RILEKFV 262
++++ F+
Sbjct: 126 KLIKSFI 132
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 3.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 62 DKLGFDELRSKYKDVLSKAFENNNIDLLDSFTKNANE 172
D+ D+L D +S A+E+N L DS A+E
Sbjct: 780 DEYKIDDLDVSAGDFISPAYESNFDGLFDSLEHEASE 816
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 3.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 285 LQESMQNETNFSRILDSSANNSRSLSLKA*SIAAFRSDSLAFFVNESSKS 136
L S+ +F ++ + + NNS S SL + + S+ FFV S+S
Sbjct: 124 LYASLNTTPHFPQVSNHAPNNSNSPSLTWHTSSGDDSNQNPFFVRRQSQS 173
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 83 LRSKYKDVLSKAFENNNIDLLDSFTKNANESDRKAAMDQAFRDKLLELLA 232
L++ + +L F NNN++ +D+ + + S + DKL E LA
Sbjct: 469 LKTNDQSLLESCFNNNNVETIDTTIRRLDPS-----LAPILLDKLAEKLA 513
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 4.9
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 65 KLGFDELRSKYKDVLSKAFENNNIDLLDSFTKNANESDRKAAMDQAFRDKLLELLAEES 241
KL +D KD++ KAF + +I+ LD A+ +D R + +LL+ ++
Sbjct: 371 KLSWDAEDPHRKDLIKKAFTSQDIEDLDFSAYIASSESEDEDVD-VIRSRYQKLLSGDA 428
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 114 KHLKITIS---TYWIHSQKMLMNLTGKQQWIKLSGINS 218
KH I ++ +YW++ M N+T W K+ G N+
Sbjct: 561 KHWDINLNPPYSYWLYY--MYANMTSLNSWRKIRGFNT 596
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 179 RKAAMDQAFRDKLLELLAEESRILEKFVSFCIDSCRRQMVTP 304
+ A+ D A R+ L + +++ + FCIDS R P
Sbjct: 589 QSASSDNALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELP 630
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 24.2 bits (50), Expect = 6.4
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +2
Query: 44 KNFTMSDKLGFDELRSKYKDVLSKAF--ENN--NIDLLDSF 154
++ +MSD L+SKY D+L K E+N N+DL D +
Sbjct: 39 QDISMSDAGDEPFLKSKYMDILQKISNRESNVINVDLNDLY 79
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 279 ESMQNETNFSRILDSSANNSRSLS 208
+++QN + + IL+S NNS SLS
Sbjct: 634 QALQNNADATLILNSYNNNSSSLS 657
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.2 bits (50), Expect = 6.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 98 KDVLSKAFENNNIDLLDSFTKNANESDRKAAMDQAFRDKLLELLAEESRI 247
KD+ SK+ N+ TK + +DR + + RD+L +L E+ ++
Sbjct: 4 KDISSKSPSGNDALNDKKGTKTSETNDRNSTNNTKERDELEDLSEEDLQL 53
>SPBC119.18 |||mitochondrial distribution and morphology protein
Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 69
Score = 23.8 bits (49), Expect = 8.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 77 DELRSKYKDVLSKAFENNNID-LLDSFTK 160
DEL ++YK L KA + ID LL++ K
Sbjct: 39 DELFAEYKSCLLKALKTKKIDPLLEAARK 67
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 23.8 bits (49), Expect = 8.5
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 98 KDVLSKAFENNNIDLLDSFTKNANESDRKAAMDQAFRDKLLELLAEESRILEK 256
K+ + + +N N++L D + M ++ RDK E E R+L++
Sbjct: 519 KEKMEREMKNKNLELADMILERDRARHELETMHRSQRDK-QESTERELRLLQE 570
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 120 LKITISTYWIHSQKMLMNLTGKQQWIKLS 206
+K + W HS K +N++ +W K S
Sbjct: 537 VKTLYALSWAHSSKTKLNISYSVEWSKSS 565
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,926
Number of Sequences: 5004
Number of extensions: 27298
Number of successful extensions: 96
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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