Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M18
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 32 0.12
08_02_1538 + 27688443-27689051 30 0.64
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 28 2.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 27 3.4
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 27 4.5
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448... 27 4.5
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 26 7.9
02_02_0365 + 9488328-9488583,9489343-9489495,9491159-9491451,949... 26 7.9
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 32.3 bits (70), Expect = 0.12
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 83 LRSKYKDVLSKAFENNNI-DLLDSFTKNANESDRKAAMDQAFRDKLLELLAEESRILEK 256
+RSK+ + + F +NN+ DL + + K+ + A + A R K+++LLA +I EK
Sbjct: 637 MRSKFSEEIKCDFISNNLADLWNKWIKDMKDLP-VAELADAIRSKIMDLLARRKKIGEK 694
>08_02_1538 + 27688443-27689051
Length = 202
Score = 29.9 bits (64), Expect = 0.64
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +2
Query: 92 KYKDVLSKAFENNNIDLLDSFTKNANESDRKAAMDQAFRDKLLELLAEESRILEKFVSFC 271
K D + +A + I L+ K+ ++ +K D+ DK+++LL++ I +
Sbjct: 77 KGDDAVVQAKIQSYIRLMKKAKKHFKKTVKKVTSDKE-DDKMVKLLSKAREITTSVLESS 135
Query: 272 IDSCRRQMVTPTMPVV 319
+D +Q+ TP M ++
Sbjct: 136 MDLLSKQIATPKMSII 151
>11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 27.9 bits (59), Expect = 2.6
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Frame = +2
Query: 29 LKRDIKNFTMSD-KLGF-DELRSKYKDVLSKAFENNNIDLLDSFTKNANESDRKAAMDQA 202
+ R+ K+F + + KL F + + + + F + ID+LDS + +E KA D+
Sbjct: 740 ISRECKSFNLPNAKLSFLPTINNDHWTIFCFNFNHKRIDILDSLGHDRDEKALKAMKDRV 799
Query: 203 ---FRDKLLELLAEESRILEKFVSFCIDSCRRQMV 298
F D L + ++ + K+ C +C ++ V
Sbjct: 800 VGRFLDVLDVMFPKKFTDVRKWK--CYHACNQKQV 832
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 282 QESMQNETNFSRILDSSANNSRSLSLKA*SIAA 184
+ES + T F RILD + ++SLKA S++A
Sbjct: 472 KESGKEATQFVRILDPKKAQNLAISLKALSVSA 504
>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 167 NESDRKAAMDQAFRDKLLELLAEESRILEKFVSFCIDSCRRQMVTPTMP 313
N D ++ D +LL L+ ++E S C+DSC Q + MP
Sbjct: 2157 NIFDNRSVDDSYHEQELLNDLSAPKSLVEP-CSACMDSCNGQAILEDMP 2204
>08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,
4485434-4485660,4486238-4486324,4486408-4487114,
4487206-4487270,4487323-4487837,4487898-4487991,
4488116-4488398,4488494-4488689,4488913-4489254
Length = 1721
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +2
Query: 29 LKRDIKNFTMSDKLGFDELRSKYKDVLSKAFENNNIDLLDSF---TKNANESDRKAAMDQ 199
L +++K+F ++ L +KY DV +N+N + N + ++
Sbjct: 1522 LVQEVKSFCEKHEIDIPNLNNKYVDVTKSQNKNDNTTAFHYYKVDVFNVAIDQQMIELED 1581
Query: 200 AFRDKLLELLAEESRILEKFVSFCIDSCRRQM 295
F + +LLA + + SF + C+ Q+
Sbjct: 1582 RFGSQATDLLALCVCLESRLESFDMAKCQLQL 1613
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 26.2 bits (55), Expect = 7.9
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Frame = +2
Query: 5 EDLV**IDLKRDIKNFTMSDKLGFDELRSKYKDVLSKAFE----NNNIDL-LDSFTKNAN 169
EDL DL +TM+DK D + +Y++ KA E + I + +N +
Sbjct: 732 EDLSEQDDLPLSPPKYTMTDKWILDHQKRRYEENKRKALELQKAHRRISASYEKLKENVS 791
Query: 170 ES-DRKAAMDQAFRDKLLELLAEESRILEKFV 262
S D A K L+LL + R+ +F+
Sbjct: 792 SSEDLSAKTKSVIELKKLQLLQLQRRVRSEFL 823
>02_02_0365 +
9488328-9488583,9489343-9489495,9491159-9491451,
9491538-9492105,9492503-9493011
Length = 592
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 119 FENNNIDLLDSFTKNANES 175
F +N+D DSF KN NES
Sbjct: 398 FSMDNVDSSDSFQKNDNES 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,274,586
Number of Sequences: 37544
Number of extensions: 145223
Number of successful extensions: 395
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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