Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M17
(346 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 87 5e-19
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 2.5
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 25 2.5
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 24 5.8
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 24 5.8
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 24 5.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 5.8
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 24 7.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 24 7.6
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 7.6
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 24 7.6
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 87.4 bits (207), Expect = 5e-19
Identities = 40/81 (49%), Positives = 55/81 (67%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAINDHL 281
K+ YF K+ L ++Y F+V DNV SQQM +R LRG + ++MGKNTM+R+A+ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 282 ETNPALEKLLPHINGNVGFVF 344
P LE+LLP + GNVGFVF
Sbjct: 68 NDMPELERLLPVVRGNVGFVF 88
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 2.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 222 HSIVLMGKNTMMRKAINDHLE 284
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 2.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 54 PYFTQSKMGREDNATWKSNY 113
PYF Q+ M D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 24.2 bits (50), Expect = 5.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 150 KCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPA 296
K IVGA NVGS + +S IV++ N +KA + ++ N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 24.2 bits (50), Expect = 5.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 305 FFESWICFKMVIDGFPHHGVFAHE 234
FF+S++CF +V+ F H + +
Sbjct: 515 FFQSYLCFPVVVIVFIAHALITRQ 538
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 24.2 bits (50), Expect = 5.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 188 LRAYIVRTHYETFWVFVQQLDDFN---EVIGLPGSIVLPTHLGLSE 60
LRA+I R+ F FV + + FN E++ + GSI+ L L E
Sbjct: 275 LRAFIRRSINNLFLQFVYENEQFNGIAELLEILGSIINGFALPLKE 320
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 5.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 13 GLCVFVLSLNFSEVPTSLNPRWVGRTMLPGS 105
GLC + L+ + ++NP ++GR LP +
Sbjct: 1971 GLCQSPILLDAPTIFVTMNPGYLGRFKLPSN 2001
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 261 SSSWCFCP*AQCCDHAMKYGSVASVASLH 175
S S P ++ CD A KYG++ + +H
Sbjct: 317 SMSGNVAPISEICDLAKKYGAITFLDEVH 345
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 23.8 bits (49), Expect = 7.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 275 VIDGFPHHGVFAHEHN 228
VIDG PH VF + H+
Sbjct: 1017 VIDGRPHFSVFNYTHH 1032
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 15 SVRICLVLKFLRSP 56
SV++C VLK LRSP
Sbjct: 363 SVKVCHVLKELRSP 376
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 207 ISLRGHSIVLMGKNTMMRKAIND 275
+ LR + VL GKN M A+N+
Sbjct: 162 VMLRSNKCVLSGKNEMEMAALNE 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,875
Number of Sequences: 5004
Number of extensions: 31741
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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