Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M17
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 85 1e-17
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 85 2e-17
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 85 2e-17
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 29 0.98
02_04_0427 - 22809481-22810335 29 0.98
08_02_0028 - 11371547-11371657,11372326-11372518,11372738-113728... 29 1.3
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 1.7
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 3.9
07_03_0662 + 20431448-20432767 27 3.9
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 27 5.2
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 5.2
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 27 5.2
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 26 6.9
04_01_0425 + 5609819-5610331,5610450-5610664,5612720-5612959,561... 26 6.9
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 26 9.1
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222... 26 9.1
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 85.0 bits (201), Expect = 1e-17
Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = +3
Query: 81 REDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 260
+ A K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 261 KAINDHLET--NPALEKLLPHINGNVGFVF 344
+ I H + N +L+P + GNVG +F
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIF 93
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 84.6 bits (200), Expect = 2e-17
Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = +3
Query: 81 REDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 260
+ A K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 261 KAINDHLET--NPALEKLLPHINGNVGFVF 344
+ I H + N +L+P + GNVG +F
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIF 93
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 84.6 bits (200), Expect = 2e-17
Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = +3
Query: 81 REDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 260
+ A K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 261 KAINDHLET--NPALEKLLPHINGNVGFVF 344
+ I H + N +L+P + GNVG +F
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIF 93
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 29.1 bits (62), Expect = 0.98
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 90 NATWKSNYFVKIIQLLDEYPKCF 158
N +++Y VKII+LL EY CF
Sbjct: 64 NKNMRADYKVKIIELLKEYVDCF 86
>02_04_0427 - 22809481-22810335
Length = 284
Score = 29.1 bits (62), Expect = 0.98
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 293 WICFKMVIDGFPHHGVFAHEHNAVTTQ*N 207
W F+ I FP GVF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>08_02_0028 -
11371547-11371657,11372326-11372518,11372738-11372814,
11373498-11373608,11374533-11374659,11374745-11375022
Length = 298
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 1 ARGRGLCVFVLSLNFSEVPTSLNPRWVGRTMLPGSPITSLKSSNCWT 141
+RGR + V + S ++ P GR+ LP P S+ SS CW+
Sbjct: 203 SRGRHIDVGIPVQKVSVTGEAVGPN--GRSWLPSPPRISISSSFCWS 247
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 320 DVRKQFFESWICFKMVIDGFPHHGVFAHEHNAVTTQ*NT 204
D Q+FE+W C ++ GF G F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +3
Query: 144 YPKCFI--VGADNVGSQQMQQIRISL 215
Y KC I VG DN+ Q MQQ R SL
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSL 1317
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 207 YGSVASVASLHCPHPL 160
YG +AS SL CP PL
Sbjct: 417 YGGLASAGSLQCPRPL 432
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 183 SLHCPHPL*NILGIRPTVG 127
S+ CP L +++GI+PTVG
Sbjct: 177 SILCPSSLNSVVGIKPTVG 195
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 159 IVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPALEKLL 311
++G +NV M RI+ R H+++ +G + +K+ + PA+E+ +
Sbjct: 559 VLGEENVNVSFMSVGRIAPRKHAVMAIGVDEEPKKSTLTKIGEIPAIEEFV 609
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 183 SLHCPHPL*NILGIRPTVG 127
S+ CP L +++GI+PTVG
Sbjct: 176 SILCPSSLNSVVGIKPTVG 194
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 183 SLHCPHPL*NILGIRPTVG 127
S+ CP L +++GI+PTVG
Sbjct: 209 SILCPASLNSVVGIKPTVG 227
>04_01_0425 +
5609819-5610331,5610450-5610664,5612720-5612959,
5613122-5613232,5613789-5613987,5614097-5614453
Length = 544
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 192 SVASLHCPHPL*NILGIRPTVG 127
+ AS+ CP +++GI+PTVG
Sbjct: 204 TTASILCPAAANSVVGIKPTVG 225
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 27 CLVLKFLRSPYFTQSKMGREDNATWKSNYFVKIIQLLDEYPK 152
CL L+FL T + R T K + II++L+ YP+
Sbjct: 812 CLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>07_03_0337 +
16918613-16919078,16921610-16921725,16922039-16922208,
16922509-16922602,16923371-16923457,16923529-16923609,
16923800-16923925,16924541-16924649,16924723-16924802,
16925401-16925529,16925605-16925705,16926075-16926208,
16926307-16926404,16926488-16926607,16927008-16927022,
16927930-16927957,16928066-16928118,16928446-16928517,
16928605-16928652,16928928-16929033,16929110-16929168,
16929792-16929887,16929942-16929959
Length = 801
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 255 MRKAINDHLETNPALEKLLPHIN 323
+RK + +H +T A E L H+N
Sbjct: 114 LRKEVEEHKQTQKATEAALEHVN 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,579,325
Number of Sequences: 37544
Number of extensions: 212324
Number of successful extensions: 460
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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