Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M17
(346 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic ri... 168 5e-42
BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein. 168 5e-42
BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, larg... 168 5e-42
AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0 va... 168 5e-42
AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein. 168 5e-42
AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0 va... 167 1e-41
AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein. 165 3e-41
BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein. 159 2e-39
U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein. 31 0.97
U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein. 31 0.97
U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3 pro... 31 0.97
BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3 p... 31 0.97
AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3 p... 31 0.97
AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3 p... 31 0.97
AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3 p... 31 0.97
AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C ... 31 0.97
AJ512501-1|CAD54734.1| 4007|Homo sapiens extracellular matrix pr... 30 1.7
AB040933-1|BAA96024.2| 2240|Homo sapiens KIAA1500 protein protein. 30 1.7
AF152479-1|AAD43740.1| 807|Homo sapiens protocadherin alpha 1 s... 29 5.2
AF152305-1|AAD43699.1| 950|Homo sapiens protocadherin alpha 1 p... 29 5.2
AC005609-13|AAC34325.1| 807|Homo sapiens KIAA0345-like 13 protein. 29 5.2
>M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P0 mRNA, complete cds. ).
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein.
Length = 255
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein.
Length = 317
Score = 168 bits (408), Expect = 5e-42
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 167 bits (405), Expect = 1e-41
Identities = 76/90 (84%), Positives = 83/90 (92%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMG+NTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGRNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVF 90
>AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein.
Length = 317
Score = 165 bits (401), Expect = 3e-41
Identities = 77/90 (85%), Positives = 82/90 (91%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG +VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLPHI GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIWGNVGFVF 90
>BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein.
Length = 254
Score = 159 bits (387), Expect = 2e-39
Identities = 75/90 (83%), Positives = 82/90 (91%)
Frame = +3
Query: 75 MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
M RED ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
MRKAI HLE NPALEKLLP + GNVGFVF
Sbjct: 61 MRKAIRGHLENNPALEKLLP-LRGNVGFVF 89
>U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein.
Length = 428
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 DNATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 224
D+ ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein.
Length = 429
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 DNATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 224
D+ ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 229 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 277
>U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 DNATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 224
D+ ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 DNATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 224
D+ ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 DNATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 224
D+ ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3
protein.
Length = 259
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 DNATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 224
D+ ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 134 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 182
>AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 DNATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 224
D+ ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C
protein.
Length = 371
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 DNATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 224
D+ ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 171 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 219
>AJ512501-1|CAD54734.1| 4007|Homo sapiens extracellular matrix protein
protein.
Length = 4007
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 138 DEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPALE--KLL 311
++ C IV D+ + ++ + L + L+G+ T + IND E P LE K +
Sbjct: 2619 EDTKSCTIVINDDDVFENVESFTVELSMPAYALLGEFTQAKVIIND-TEDEPTLEFDKKI 2677
Query: 312 PHINGNVGFVF 344
+N + GF+F
Sbjct: 2678 YWVNESAGFLF 2688
>AB040933-1|BAA96024.2| 2240|Homo sapiens KIAA1500 protein protein.
Length = 2240
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 138 DEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPALE--KLL 311
++ C IV D+ + ++ + L + L+G+ T + IND E P LE K +
Sbjct: 852 EDTKSCTIVINDDDVFENVESFTVELSMPAYALLGEFTQAKVIIND-TEDEPTLEFDKKI 910
Query: 312 PHINGNVGFVF 344
+N + GF+F
Sbjct: 911 YWVNESAGFLF 921
>AF152479-1|AAD43740.1| 807|Homo sapiens protocadherin alpha 1
short form protein protein.
Length = 807
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 189 QMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPALEKLLPHINGNVGFV 341
++ Q ++S R + +G N ++ + D + PAL L P + G +G V
Sbjct: 529 ELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPAL--LAPRVGGTIGAV 577
>AF152305-1|AAD43699.1| 950|Homo sapiens protocadherin alpha 1
protein.
Length = 950
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 189 QMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPALEKLLPHINGNVGFV 341
++ Q ++S R + +G N ++ + D + PAL L P + G +G V
Sbjct: 529 ELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPAL--LAPRVGGTIGAV 577
>AC005609-13|AAC34325.1| 807|Homo sapiens KIAA0345-like 13 protein.
Length = 807
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 189 QMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPALEKLLPHINGNVGFV 341
++ Q ++S R + +G N ++ + D + PAL L P + G +G V
Sbjct: 529 ELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPAL--LAPRVGGTIGAV 577
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,405,438
Number of Sequences: 237096
Number of extensions: 1189453
Number of successful extensions: 2088
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2088
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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