Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M17
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   140   2e-34
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    26   8.3  
Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    26   8.3  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    26   8.3  
AF036705-7|AAB95174.1|  324|Caenorhabditis elegans Hypothetical ...    26   8.3  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  140 bits (339), Expect = 2e-34
 Identities = 60/90 (66%), Positives = 76/90 (84%)
 Frame = +3

Query: 75  MGREDNATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
           M RED +TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RGH+ +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 255 MRKAINDHLETNPALEKLLPHINGNVGFVF 344
           +RKA+  HL  NP+LEKLLPHI  NVGFVF
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVF 90


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +3

Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAINDHL 281
           K+N   ++   +D+Y   FI    N+ S +   IR   + +S    GKN ++  A+    
Sbjct: 23  KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKNNVISIALGKQK 82

Query: 282 ETNPA--LEKLLPHINGNVGFVF 344
               A  L K    + G  G +F
Sbjct: 83  SDEYANQLHKASAILKGQCGLMF 105


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 153 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPALEKL 308
           C   G D  + GS +  + R  + GH+ +L  +     + + DH+++   ++K+
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKV 234


>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 332 NISIDVRKQFFESWICFKMVIDGFPHHGVFAHEHNAVTTQ*NTDLLHLL 186
           NISI+   Q     I     +D  P+  +     NA+ TQ  TD L LL
Sbjct: 274 NISIEFISQILSCTISLYPALDPLPNFFIIKSYRNAI-TQYLTDFLRLL 321


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 189 QMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPALEKLL 311
           +M   RI  RG S+   G+N   ++ +  H   NP ++KLL
Sbjct: 240 EMDLQRIMERG-SLKHRGQNQKFKQMLEKHASRNPEVKKLL 279


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 153 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAINDHLETNPALEKL 308
           C   G D  + GS +  + R  + GH+ +L  +     + + DH+++   ++K+
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKV 234


>AF036705-7|AAB95174.1|  324|Caenorhabditis elegans Hypothetical
           protein F37C4.8 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 303 FRELDLFQDGH*WLSSSWCFCP*AQC 226
           F+ L+LF +   W   S C CP A C
Sbjct: 44  FQNLELFVEWSNWSCCSACCCPKAVC 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,975,181
Number of Sequences: 27780
Number of extensions: 178966
Number of successful extensions: 452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)