Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M16
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    27   1.5  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   3.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   4.6  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   6.1  

>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 276 VLYQVVSQLSPCARIVSGPDINKAMKLQHELQSR 175
           VL Q ++++SP  ++VS    NK+++    L+ R
Sbjct: 164 VLKQAIAEISPLMKLVSAKRFNKSVEFPMPLKER 197


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 428  YLNTVLSERHVWWRLAGFWRRRMAFVRHSRLI 333
            Y   VLS+ + W  +AG+W+++   V   +LI
Sbjct: 1052 YKKMVLSKNNRW--VAGYWKKKYCIVDSGKLI 1081


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 213 LCQGQTRCGHTATVGKLLDTVLDT 284
           +  G TRCG    V KLL+ + DT
Sbjct: 745 MVNGPTRCGKHVLVCKLLEVLQDT 768


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 342 ETYNKRNTA-KDPKMQREPRAYRVL 271
           E   +RN   KDPK+ R+P+  R+L
Sbjct: 483 EARRRRNAVRKDPKLSRQPQVGRLL 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,622
Number of Sequences: 5004
Number of extensions: 39299
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)