Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M16
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell death-re...    32   0.19 
AC024791-9|AAF60653.1|  382|Caenorhabditis elegans Cell-death-re...    32   0.19 
U80027-8|AAY86317.1|  170|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81045-4|CAB54202.2|  402|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical p...    27   7.3  
Z19152-6|CAA79542.2|  774|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z19152-5|CAA79541.1|  698|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF241656-1|AAG36873.1|  698|Caenorhabditis elegans SR protein sp...    27   7.3  

>AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell
           death-related nuclease 1 protein.
          Length = 382

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 126 RLVREEGTTNGHTNRLIAIGARVGVSLPYLCQGQTRCGHTATVGKLLDTVLDTREAL 296
           RLV+     N    RL+ +     V  P  C+ + +C H    GK+  TV +  +AL
Sbjct: 129 RLVKVTKQQNDEAKRLLGLMGIPVVEAP--CEAEAQCAHLVKAGKVFGTVTEDMDAL 183


>AC024791-9|AAF60653.1|  382|Caenorhabditis elegans
           Cell-death-related nuclease protein1 protein.
          Length = 382

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 126 RLVREEGTTNGHTNRLIAIGARVGVSLPYLCQGQTRCGHTATVGKLLDTVLDTREAL 296
           RLV+     N    RL+ +     V  P  C+ + +C H    GK+  TV +  +AL
Sbjct: 129 RLVKVTKQQNDEAKRLLGLMGIPVVEAP--CEAEAQCAHLVKAGKVFGTVTEDMDAL 183


>U80027-8|AAY86317.1|  170|Caenorhabditis elegans Hypothetical
           protein T28A11.22 protein.
          Length = 170

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 435 KPIFEHSPFREARLVASC--RVLEEADGVRPAFETYNK--RNTAKDPKMQREPRAY 280
           KP F+HSP R+ R   S    +LE  D   P   T+ K  RN  K+ K+ +  + +
Sbjct: 10  KPHFKHSPIRQLREFESSSENLLEPDDLDSPRNRTFFKKLRNAMKNRKLLQTKKVW 65


>Z81045-4|CAB54202.2|  402|Caenorhabditis elegans Hypothetical
           protein C36F7.4b protein.
          Length = 402

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 175 SRLELVLEF-HCLIYVRARHDAGTRRQLGNYLIQYSIRARLSLH-FGILCRIALIISLEC 348
           SRL L L F        A   A T R  G ++I + I  +  ++ F +LC + L+    C
Sbjct: 19  SRLHLCLLFGKWTARDSALSGAPTFRGRGRFVILFHIPLQEKMYLFALLCGVLLVFKQAC 78

Query: 349 RTNAIRLLQNPA 384
              A   +Q P+
Sbjct: 79  SRGAPPTIQQPS 90


>Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical
           protein B0464.5a protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 90  QETIQIAAPRRLLLRPFGAQSPFSRCPP 7
           + T +IA     LL PFG ++P S CPP
Sbjct: 892 RSTAKIALKHPFLL-PFGGRAPKSDCPP 918


>Z19152-6|CAA79542.2|  774|Caenorhabditis elegans Hypothetical
           protein B0464.5c protein.
          Length = 774

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 90  QETIQIAAPRRLLLRPFGAQSPFSRCPP 7
           + T +IA     LL PFG ++P S CPP
Sbjct: 663 RSTAKIALKHPFLL-PFGGRAPKSDCPP 689


>Z19152-5|CAA79541.1|  698|Caenorhabditis elegans Hypothetical
           protein B0464.5b protein.
          Length = 698

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 90  QETIQIAAPRRLLLRPFGAQSPFSRCPP 7
           + T +IA     LL PFG ++P S CPP
Sbjct: 604 RSTAKIALKHPFLL-PFGGRAPKSDCPP 630


>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 113 PSHRPGGCKKRYKSLRPGVCF 51
           P HR   C KR  S   GVCF
Sbjct: 237 PGHRLADCPKRNSSSSDGVCF 257


>AF241656-1|AAG36873.1|  698|Caenorhabditis elegans SR protein
           specfic kinase SPK-1 protein.
          Length = 698

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 90  QETIQIAAPRRLLLRPFGAQSPFSRCPP 7
           + T +IA     LL PFG ++P S CPP
Sbjct: 604 RSTAKIALKHPFLL-PFGGRAPKSDCPP 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,272
Number of Sequences: 27780
Number of extensions: 234034
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)