Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M16
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.3  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   5.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 205 NETPTRAPIAINLFVCPFVVPSSRTSLNDTCPVI 104
           N TP R P     +   F++ SS +S    C ++
Sbjct: 326 NNTPDRTPDQCLFYNTDFIIYSSLSSFYIPCIIM 359


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 443 INKNLYLNTVLS 408
           I K+LY NTVLS
Sbjct: 64  IRKDLYANTVLS 75


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 340 LECRTNAIRLLQNPARRHQTCLSERTVFKYR 432
           LE RTN  R  ++  R   +  +ER   KYR
Sbjct: 29  LEERTNRKRNSRSREREQNSYKNEREYRKYR 59


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 340 LECRTNAIRLLQNPARRHQTCLSERTVFKYR 432
           LE RTN  R  ++  R   +  +ER   KYR
Sbjct: 29  LEERTNRKRNSRSREREQNSYKNEREYRKYR 59


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 66   PRRLLLRPFGAQSPFSRCPP 7
            PRR +       +P  RCPP
Sbjct: 1684 PRRHMYEELNHCAPNRRCPP 1703


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,799
Number of Sequences: 438
Number of extensions: 2971
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)