Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M15
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 85 5e-18
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 45 7e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 35 0.007
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 30 0.16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 29 0.28
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 27 1.9
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 1.9
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 2.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 3.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 85.0 bits (201), Expect = 5e-18
Identities = 36/84 (42%), Positives = 54/84 (64%)
Frame = +3
Query: 228 NMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEG 407
N+ + +W + +L PF KDFY H++V +RS EV +YR + E+ V G+ P+ FEE
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 408 NFPDYVCXAIKSMGYKDPTPIQAQ 479
FP+YV +K +G++ PTPIQ Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQ 151
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 44.8 bits (101), Expect = 7e-06
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVVSTNPIEHFEEGNFPDYVCX 431
++ + F KDFY + + + SP EV++ R + + + G+ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 432 AIKSMGYKDPTPIQAQ 479
I S+GY+ PT IQAQ
Sbjct: 432 VINSLGYEKPTSIQAQ 447
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 34.7 bits (76), Expect = 0.007
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 339 RNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
+ + +++ G NP+ ++EE P + +K + YK+P+ IQ
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQ 276
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 30.3 bits (65), Expect = 0.16
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 396 FEEGNFPDYVCXAIKSMGYKDPTPIQAQ 479
F+E D +C A + +G+K PTPIQ +
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQE 75
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 29.5 bits (63), Expect = 0.28
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 324 EVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
E ED R + V ++ ST+ IE F + + + AIK MG++ T IQ
Sbjct: 68 ENEDERVQKSVNLNAS-STSDIEKFSDLQLSENIQKAIKEMGFETMTEIQ 116
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 351 EVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQAQ 479
E+T S V N + FEE N + + I + GY+ P+ +Q++
Sbjct: 10 ELTTSEDV--NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 336 YRNKHEVTVSGVVSTN---PIEHFEEGNFPDYVCXAIKSMGYKDPTPIQA 476
Y KH ++ + S+ PI F+E + + +K+ YK+PTPIQA
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQA 193
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 354 VTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
V VSG P+ F ++ IK GY PTP+Q
Sbjct: 158 VEVSGG-DIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQ 196
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 318 PYEVEDYRNKHEVTVS 365
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,650
Number of Sequences: 5004
Number of extensions: 30483
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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