Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M15
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 72 2e-13
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 63 1e-10
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 62 3e-10
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 52 2e-07
08_01_0397 - 3509186-3510291,3510322-3512335 47 9e-06
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 46 1e-05
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 46 1e-05
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 43 1e-04
02_01_0765 - 5694535-5694644,5695039-5696550,5697229-5697390,569... 35 0.039
07_03_1500 + 27001842-27002058,27002144-27002283,27002458-270025... 34 0.052
03_05_0865 - 28365430-28367640 31 0.49
02_01_0381 - 2764331-2764342,2768966-2769907 30 0.85
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 29 2.0
01_07_0192 - 41888998-41890632 29 2.6
03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995 28 3.4
06_03_1265 + 28847782-28849803 27 7.9
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 27 7.9
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 72.1 bits (169), Expect = 2e-13
Identities = 34/80 (42%), Positives = 46/80 (57%)
Frame = +3
Query: 240 PNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPD 419
P D SL PF K+FY +V S +V YR + ++TV G P+ +F+E NFPD
Sbjct: 106 PKPDFRSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEANFPD 165
Query: 420 YVCXAIKSMGYKDPTPIQAQ 479
Y AI G+ +PTPIQ+Q
Sbjct: 166 YCMQAIAKSGFVEPTPIQSQ 185
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 62.9 bits (146), Expect = 1e-10
Identities = 30/73 (41%), Positives = 40/73 (54%)
Frame = +3
Query: 261 LQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIK 440
L F K+FY SV + EVE YR + E+TV G P+ F + FP+YV I
Sbjct: 48 LPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEIT 107
Query: 441 SMGYKDPTPIQAQ 479
G+ +PTPIQ+Q
Sbjct: 108 KAGFVEPTPIQSQ 120
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 61.7 bits (143), Expect = 3e-10
Identities = 31/76 (40%), Positives = 39/76 (51%)
Frame = +3
Query: 252 SLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCX 431
++ +PFNKDFY SV S EV DY + VSG PI+ F + FP +
Sbjct: 173 TIEYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMN 232
Query: 432 AIKSMGYKDPTPIQAQ 479
AI GY+ PT IQ Q
Sbjct: 233 AIAKQGYEKPTTIQCQ 248
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = +3
Query: 330 EDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQAQ 479
E YR++HE+TV G PI FE G FP + I+ G+ PTPIQAQ
Sbjct: 130 EAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQ 179
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 46.8 bits (106), Expect = 9e-06
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +3
Query: 255 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXA 434
+ QPF K+FY K + + EV YR + E+ V G PI+ + + +
Sbjct: 379 IDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDT 438
Query: 435 IKSMGYKDPTPIQAQ 479
IK +G++ P IQAQ
Sbjct: 439 IKKLGFEKPMSIQAQ 453
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +3
Query: 255 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXA 434
+ QPF K+ Y K + + EV YR E+ V G PI+ + + +
Sbjct: 240 IEYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDT 299
Query: 435 IKSMGYKDPTPIQAQ 479
IK +G++ P PIQAQ
Sbjct: 300 IKKLGFEKPMPIQAQ 314
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +3
Query: 330 EDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQAQ 479
E YR KHE+T+ G + P F+ FP + ++ G+ PTPIQAQ
Sbjct: 160 EAYRAKHEITIVGNEAPAPFMTFQSTGFPPEILREVQQAGFSAPTPIQAQ 209
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/48 (43%), Positives = 25/48 (52%)
Frame = +3
Query: 336 YRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQAQ 479
YR HEVT G P FE FP + I + G+ +PTPIQAQ
Sbjct: 586 YRQHHEVTAVGENVPPPFMTFEATGFPPEILQEIHAAGFLNPTPIQAQ 633
>02_01_0765 -
5694535-5694644,5695039-5696550,5697229-5697390,
5698015-5698057
Length = 608
Score = 34.7 bits (76), Expect = 0.039
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 324 EVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQAQ 479
++ R+K ++ V G +PI F P+ + +++ GY PTP+Q Q
Sbjct: 160 QIASLRSKLDICVKGEDVPDPIMCFSSSGLPEKLVLNLEAAGYVMPTPVQMQ 211
>07_03_1500 +
27001842-27002058,27002144-27002283,27002458-27002549,
27002680-27002776,27002871-27002951,27003031-27003263,
27003876-27004070,27004149-27004239,27004324-27004446,
27004542-27004692,27005060-27005262
Length = 540
Score = 34.3 bits (75), Expect = 0.052
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 339 RNKHEVTVSGVVSTNPIEHFEE----GNFPDYVCXAIKSMGYKDPTPIQAQ 479
R K ++ +SG P+E+FEE Y+ + +G+++PTPIQ Q
Sbjct: 125 RKKFDIHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQ 175
>03_05_0865 - 28365430-28367640
Length = 736
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +3
Query: 297 KSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
KS+ + + + +R ++ G P+ + E + A++ GYK+P+PIQ
Sbjct: 284 KSLDEMTERDWRIFREDFNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQ 342
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 324 EVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQAQ 479
+ ++ R K + V G P F + P+ + ++ G PTPIQ Q
Sbjct: 160 KADELRRKWHILVDGDDVPPPARDFRDLRLPEPMLRKLREKGIVQPTPIQVQ 211
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 354 VTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
V VSG P + FE + V + GY+ PTP+Q
Sbjct: 72 VEVSGEDVPPPADGFEAAGLVEAVLRNVARCGYESPTPVQ 111
>01_07_0192 - 41888998-41890632
Length = 544
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 363 SGVVSTNP--IEHFEEGNFPDYVCXAIKSMGYKD 458
SGV + NP ++HF +FP+YV A ++ ++D
Sbjct: 84 SGVATANPAVVDHFLRASFPNYVKGARFAVPFED 117
>03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995
Length = 173
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -3
Query: 452 VTHTFY----CXTHIIWKVALFKMFNRISTHNSTNSDFVFVSIVLY 327
V +TFY C TH++ K + K N+I +S +++SI+ +
Sbjct: 19 VYNTFYVPMACGTHVMMKKSCHKCDNQIDAKLGQSSTHIYLSIIAF 64
>06_03_1265 + 28847782-28849803
Length = 673
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 202 PRKISLVGKICDALIGIRCRSNHLTKIFIILINQSW 309
PR +S V K C+ L+G RS LT+ +++I++SW
Sbjct: 414 PRIVSFVAKYCNQLLGDPYRS-VLTQ--VLVIHRSW 446
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 297 KSVLDRSPYEVEDYRNKHEVTVSGVV-STNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
+ V D + +++D + + G++ + + + E + A++ +G+K+PTPIQ
Sbjct: 110 EDVSDDNVEDMQDGNDMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLGFKEPTPIQ 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,473
Number of Sequences: 37544
Number of extensions: 182252
Number of successful extensions: 405
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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