Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M15
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    48   4e-06
U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical pr...    48   4e-06
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    46   1e-05
AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    36   0.012
AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    34   0.046
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    34   0.046
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    34   0.046
AC025726-23|AAK73934.1|  763|Caenorhabditis elegans Hypothetical...    29   1.7  
Z81088-10|CAB03131.1|  337|Caenorhabditis elegans Hypothetical p...    28   3.1  
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    27   5.3  

>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 23/82 (28%), Positives = 43/82 (52%)
 Frame = +3

Query: 231 MRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEGN 410
           +R  +W + +L P  KDFY+ + +V  R  YE++ + + ++VT+ G     P+  F E  
Sbjct: 77  LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAP 136

Query: 411 FPDYVCXAIKSMGYKDPTPIQA 476
            P  +   +    ++ PT IQ+
Sbjct: 137 LPGQIHELLYGK-FQKPTVIQS 157


>U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical
           protein F01F1.7 protein.
          Length = 730

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 297 KSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQA 476
           K + + S  +   +R    +++ G     P+ ++EE  FPD V  A+K +GY +PTPIQ 
Sbjct: 270 KELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQR 329

Query: 477 Q 479
           Q
Sbjct: 330 Q 330


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +3

Query: 255 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVVSTNPIEHFEEGNFPDYVCXA 434
           +  Q FNK+FY  H+ +      +V   +N   + V G+    P+  F   +F   +  A
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEA 279

Query: 435 IKSMGYKDPTPIQA 476
           I+   Y+ PTPIQA
Sbjct: 280 IRKSEYEQPTPIQA 293


>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 270 FNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVVSTNPIEHFEEGNFPDYVCXAIKSM 446
           F K+FY   + +   +  EV+ YR + + +TV G+    PI+ + +      +   +K  
Sbjct: 263 FKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKF 322

Query: 447 GYKDPTPIQAQ 479
            Y  PT IQAQ
Sbjct: 323 EYSKPTSIQAQ 333


>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 34.3 bits (75), Expect = 0.046
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 354 VTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
           V VSG      IEHF E  F   V   +   GY  PTP+Q
Sbjct: 127 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQ 166


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 34.3 bits (75), Expect = 0.046
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 354 VTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
           V VSG      IEHF E  F   V   +   GY  PTP+Q
Sbjct: 111 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQ 150


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 34.3 bits (75), Expect = 0.046
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 354 VTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
           V VSG      IEHF E  F   V   +   GY  PTP+Q
Sbjct: 108 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQ 147


>AC025726-23|AAK73934.1|  763|Caenorhabditis elegans Hypothetical
           protein Y71G12B.8 protein.
          Length = 763

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 396 FEEGNFPDYVCXAIKSMGYKDPTPIQ 473
           FE+ N    +  A    GY DPTPIQ
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQ 175


>Z81088-10|CAB03131.1|  337|Caenorhabditis elegans Hypothetical
           protein F53F1.10 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -3

Query: 461 RIFVTHTFYCXTHIIWKVALFKMFNRISTHNSTNSDFVFVSIVLYF 324
           ++ ++   +C TH +W + L   +     HN + S  V + ++L F
Sbjct: 89  KVGLSFFLHCLTHSVWSLLLSFGYRFYILHNPSLSRLVLLKLILVF 134


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 354 VTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
           V  +G     PI  F + +  +++   IK+ GY  PTP+Q
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQ 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,739,759
Number of Sequences: 27780
Number of extensions: 166879
Number of successful extensions: 465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)