Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M15
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       39   3e-05
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 38.7 bits (86), Expect = 3e-05
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +3

Query: 351 EVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMGYKDPTPIQ 473
           +V VSG     PIE FE     + V   IK  GYK PTP+Q
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQ 223


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 256 CRSNHLTKIFIILINQSWIGHHMK 327
           C  NHL ++  +    +W+ H +K
Sbjct: 99  CIENHLKQLGYVQKLDTWVPHELK 122


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 345 KHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMG 449
           K EVT  GV++   I   E  +   Y C A    G
Sbjct: 860 KREVTPDGVIAQLQISSAEASDSGAYFCQASNLYG 894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 345 KHEVTVSGVVSTNPIEHFEEGNFPDYVCXAIKSMG 449
           K EVT  GV++   I   E  +   Y C A    G
Sbjct: 856 KREVTPDGVIAQLQISSAEASDSGAYFCQASNLYG 890


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,389
Number of Sequences: 438
Number of extensions: 2078
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)