Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M12
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    29   0.35 
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   1.4  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   1.4  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.9  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   3.3  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   3.3  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   5.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   7.6  

>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 538 LFIYIYISKVCFLVRGKLENYW---TDQRETATIRRGINRRW 422
           L  +I +    F +  K+EN W    ++RE A IRR IN R+
Sbjct: 228 LVSFIGVPLCLFALPDKMENAWFLTREEREVAIIRRDINARY 269


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 266 IFWIPPILSHFFFRFILLYIF 204
           + WI P++S  FF + LL++F
Sbjct: 437 VHWIVPLISSIFFGWSLLFVF 457


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 535 FIYIYISKVCFLVRGKLENYW 473
           +I+ Y+SKV +  R KL+ YW
Sbjct: 122 YIHEYLSKVLYARRNKLDPYW 142


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 266 IFWIPPILSHFFFRFILLYIF 204
           I WI PI++  FF F LL +F
Sbjct: 442 IHWIVPIIASAFFGFSLLIVF 462


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 291 NAVFLVDRYFLDSTDPLSFFFSIYSFVHFPLQFTLIYIYSAN 166
           N ++L + Y L  T    FF S  SFV    ++ + + Y AN
Sbjct: 20  NMIWLYEVYMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCAN 61


>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 232

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 357 IIPLAHHHLKTTEHIGIGLIPINAV 283
           ++PLA  H  T   +G+GLI I ++
Sbjct: 202 LVPLAQKHTNTIWWVGLGLIAIGSI 226


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 502 LVRGKLENYWTDQRETATIRRGINRRW 422
           ++RGKL  Y   ++   TI R INR W
Sbjct: 855 ILRGKLNLYNQKEKSIKTIGRYINRFW 881


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 254 PPILSHFFFRFILLYIFHF 198
           PPIL HF F  ++L IF +
Sbjct: 315 PPILRHFSFGIVVLAIFSY 333


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 KNERGSVESKKYLSTRNTALIGISPIPICSVV 328
           +NE  S   K +   +N  L  +SP  ICS++
Sbjct: 140 RNEVDSFLQKNFFMVKNEFLYRLSPSYICSII 171


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 400 NSMSPLPCFLDLFVYYSSGAP 338
           N+   L CF     YYSSGAP
Sbjct: 475 NASPRLACFFQPSGYYSSGAP 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,952
Number of Sequences: 5004
Number of extensions: 42754
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)