Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M12
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z49968-2|CAA90259.1|  383|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    28   5.3  

>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 260 WIPPILSHFFFRFILLYIFHFNLRLYTF 177
           WI   +S + F  +LL++F F + L+TF
Sbjct: 193 WIAGYISIYQFLHVLLFVFTFTVSLFTF 220


>Z49968-2|CAA90259.1|  383|Caenorhabditis elegans Hypothetical
           protein M110.2 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 368 FVCLLFLWRTITSKLLNISG*D*YLSTQYFS*TGIFWI 255
           FVCLLF +  +   +L  +    YL + YFS T IF I
Sbjct: 208 FVCLLFAYPLVVGFILCSTSNITYLDSVYFSLTSIFTI 245


>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 251 PILSHFFFRFILLYIFHFNLRL 186
           P+L H F R     +FHFN+RL
Sbjct: 33  PVLFHMFHRCKNTQLFHFNIRL 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,325
Number of Sequences: 27780
Number of extensions: 230575
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)