Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M10
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   0.53 
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   1.6  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   2.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   3.8  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.6  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    24   8.7  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    24   8.7  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +1

Query: 145 ISCDKYWKCDN----GVSELKTCGNGLAFDATDS--KYLTENCDYLHN 270
           + CD+ W C+N    G+  L  C NG+    +D   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 169 CDNGVSELKTCGNGLAFDATDSKYLTENCDYLHNVEC 279
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +1

Query: 292 QLEPPITTPHCT---RLYGIFPDETKCDV 369
           QL  PI  PH     RLY +F +ETK D+
Sbjct: 280 QLHKPIFPPHWKVDFRLYEVFCEETKNDL 308


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 95  AQESSNAQMTSASTLTTSHAINTGSVITV 181
           A  SS +Q+T++STL TS  +++ S  T+
Sbjct: 776 ATASSQSQLTNSSTLATSLYLSSSSSRTI 804


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +2

Query: 65  ARLAAPRRIVAQESSNAQMTSASTLTTSHAINTGSVITVFP 187
           A    P  + +   +    +SAST T++H++ + ++ ++ P
Sbjct: 31  ATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVP 71


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 211 DHCRMFSIRKHRYHTSSIYRMRCGEGRSR 125
           +H    S  K  YH  +I+R + G+G  R
Sbjct: 22  NHYAQHSKNKRNYHQLTIFRSKIGKGDLR 50


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 328 LCSEEW*LEAQAVSSRHIQRCGGSHSFQ*GIWSQWRQKRDHCRMFSIRKH 179
           L ++ W    + VS R I+    SH  Q   + Q++ K  + + FS  KH
Sbjct: 388 LATDLWNNNVKLVSDR-IRANVASHGVQVWRFQQYKVKNTNDKFFSFNKH 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,360
Number of Sequences: 5004
Number of extensions: 34118
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)