Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M10
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0282 + 2093451-2094668                                           30   0.91 
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076...    28   2.8  
02_05_1048 + 33748260-33748433,33748886-33748978,33750174-337503...    27   4.9  
10_01_0001 - 22485-22526,23308-23436,24346-24473,24801-24862,253...    27   6.4  
03_05_1092 - 30331323-30331463,30331562-30331648,30331825-303320...    27   6.4  
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692     27   6.4  
05_03_0444 + 14097395-14097399,14097822-14097843,14098755-14099090     27   8.5  
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357...    27   8.5  
02_01_0707 - 5276963-5278396,5280163-5280248,5280634-5281011,528...    27   8.5  

>11_01_0282 + 2093451-2094668
          Length = 405

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 287 GHSLSLQLPLLTAQDCTVSSPMK 355
           GHSL   L +LTA D T +SPM+
Sbjct: 253 GHSLGAALAVLTAYDITTNSPMQ 275


>04_04_1499 -
           34006999-34007232,34007371-34007440,34007580-34007637,
           34007940-34007979,34008183-34008259,34008366-34008582,
           34008703-34009266
          Length = 419

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 ECGERTQLEPPITTPHCTRLYGIF 345
           + GERT L PP    H  R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167


>02_05_1048 +
           33748260-33748433,33748886-33748978,33750174-33750371,
           33750502-33750675,33750769-33750875,33751233-33751564,
           33751654-33752147
          Length = 523

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 283 ERTQLEPPITTPHCTRLYGIFPDETKCDVLLELL 384
           E  QL+PP  +    +   +FP++ K ++L+ELL
Sbjct: 46  EELQLQPPPPSLQLWQQMDLFPNKQKKNILIELL 79


>10_01_0001 -
           22485-22526,23308-23436,24346-24473,24801-24862,
           25388-25585,25807-25898,26941-26994
          Length = 234

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 163 WKCDNGVSELKTCGNGLAFDATDSKYLTEN-CDYLHNVECGERTQLEPP 306
           W C  G  E   CG   +  A     ++ + C Y +   CG   +L+PP
Sbjct: 9   WACTGGSQEA-ICGPEASKLAIAVPTISSSSCSYFYRYRCGRYEELKPP 56


>03_05_1092 -
           30331323-30331463,30331562-30331648,30331825-30332085,
           30332231-30332636,30333702-30334240
          Length = 477

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 138 RVEAEVIWAFDDSWATIRRGAASLAEFLQ 52
           RVE E +    + WA+  RG    AEFLQ
Sbjct: 96  RVETEWLHVLSEGWASPLRGFMREAEFLQ 124


>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
          Length = 540

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 424 KSGAALVAGSFTIPAVPEARRTWFHRGRYR 335
           +  AA V+G+F +PA P A R  F + R R
Sbjct: 6   RPAAASVSGAFGLPADPAAARCSFDQSRRR 35


>05_03_0444 + 14097395-14097399,14097822-14097843,14098755-14099090
          Length = 120

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 16  STGRRSKLVDPGL-QEFGEASSASAYCRP 99
           S+G  + L DP L   FG+AS+ S +C P
Sbjct: 18  SSGYNNFLKDPDLVHPFGQASTQSDFCHP 46


>04_03_0362 +
           14934236-14934541,14935549-14935647,14935736-14935798,
           14935878-14935940,14937242-14937362,14937472-14937872,
           14937968-14938141,14938252-14938570,14938659-14938735,
           14938808-14938877,14938951-14939007,14939100-14939314,
           14939436-14939561,14939649-14939944,14940032-14940203,
           14940300-14940398,14940471-14940602,14940692-14940792,
           14941391-14941580,14941819-14941842
          Length = 1034

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 380 CWNGEASRYQCSP 418
           CW G + RY+CSP
Sbjct: 77  CWRGLSRRYKCSP 89


>02_01_0707 -
           5276963-5278396,5280163-5280248,5280634-5281011,
           5281453-5281690,5281787-5282052,5282148-5282526
          Length = 926

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 47  PGCRNSARLAAPRRIVAQESSNAQMTSASTLTTSHAINTGSVITVFP 187
           PG R + RLAAPR    ++++      +S +T    +   + +TV P
Sbjct: 51  PGRRGAGRLAAPRCSTIEQAAGV----SSAVTVDRTLTVTATVTVQP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,488
Number of Sequences: 37544
Number of extensions: 269699
Number of successful extensions: 741
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)