Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M09
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 227 5e-60
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 227 5e-60
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 226 9e-60
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 31 0.66
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.66
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 2.7
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 29 2.7
02_03_0041 + 14275897-14276370 29 2.7
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 29 3.5
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 3.5
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 28 4.6
04_04_0095 - 22775340-22776017 28 4.6
10_01_0081 - 1033837-1034090,1034500-1034686,1034713-1034941,103... 28 6.1
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 28 6.1
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 28 6.1
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 28 6.1
06_03_1442 - 30172595-30172606,30172607-30172684,30173034-301734... 27 8.1
06_03_1439 - 30157110-30157121,30157122-30157199,30157549-301579... 27 8.1
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 27 8.1
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 27 8.1
03_04_0243 + 19298293-19299117 27 8.1
03_02_0966 + 12783515-12783901 27 8.1
03_01_0610 + 4478521-4478715,4480003-4480090,4480255-4480321,448... 27 8.1
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 227 bits (555), Expect = 5e-60
Identities = 105/190 (55%), Positives = 144/190 (75%), Gaps = 2/190 (1%)
Frame = +2
Query: 11 MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
++R+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +A
Sbjct: 61 LIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120
Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 364
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 365 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASA 544
L I PFSYGLV+ VYDSG++F+P +LD+ EDL EKF +GV+ VA++SL+I YPT+A+A
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAA 240
Query: 545 PHSIANGFKN 574
PH NG+KN
Sbjct: 241 PHMFLNGYKN 250
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 227 bits (555), Expect = 5e-60
Identities = 105/190 (55%), Positives = 144/190 (75%), Gaps = 2/190 (1%)
Frame = +2
Query: 11 MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
++R+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +A
Sbjct: 61 LIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120
Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 364
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 365 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASA 544
L I PFSYGLV+ VYDSG++F+P +LD+ EDL EKF +GV+ VA++SL+I YPT+A+A
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAA 240
Query: 545 PHSIANGFKN 574
PH NG+KN
Sbjct: 241 PHMFLNGYKN 250
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 226 bits (553), Expect = 9e-60
Identities = 104/190 (54%), Positives = 144/190 (75%), Gaps = 2/190 (1%)
Frame = +2
Query: 11 MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
++R+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +A
Sbjct: 61 LIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120
Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 364
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 365 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASA 544
L I PFSYGLV+ VYDSG++F+P +LD+ +DL EKF +GV+ VA++SL+I YPT+A+A
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240
Query: 545 PHSIANGFKN 574
PH NG+KN
Sbjct: 241 PHMFLNGYKN 250
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 31.1 bits (67), Expect = 0.66
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 53 ALEKL-LPH--IKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV----VIPAH 211
AL+KL LPH ++GN+GF+ + + + D +L++ A P + LS I H
Sbjct: 401 ALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARLISFIADH 460
Query: 212 N--TGLGPEKTSFFQALSI 262
N G PEK S +L +
Sbjct: 461 NKLAGSLPEKMSNLSSLEL 479
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.1 bits (67), Expect = 0.66
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +2
Query: 50 PALEK-LLPHIKGN---VGFVFTRGDLVDV--RDKLLENKVQAPARPGAIAPLSVVIPA 208
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 317 KPGDKVGASEATLLNMLNISPFS--YGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGV 490
KP D V +S TLL N + FS Y L +++ + A A D +++ EK G+
Sbjct: 423 KPSDVVASSYVTLLQAANYATFSLDYALELEERLRARERDAAAEADAMRKEVEEKAQRGL 482
Query: 491 ANVAALSL 514
A A ++
Sbjct: 483 AAAKAAAV 490
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -3
Query: 184 SNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 77
+NG+R G + L+Q++T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
>02_03_0041 + 14275897-14276370
Length = 157
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 543 ADATVGYPMDNESAATLATPARNFSRRSSGLMSRIAGAKMVPE 415
A+ G P+ E AT A RR+SG + +AG +PE
Sbjct: 88 AEEEDGVPVPGEVVATTADAQETRQRRNSGSNATVAGEDALPE 130
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +2
Query: 383 SYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAAL 508
SYG V V DSGT A LD + +FL VA V+ L
Sbjct: 83 SYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRL 124
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 290 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAI 442
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 487 SSKELLAKVLRLDVENCRREDGTGVVHLFDNKTIRK 380
+ K LL K++RLDV+N R+ L+ N +I K
Sbjct: 408 NKKSLLGKIMRLDVDNPPRQSEIANQSLWGNYSIPK 443
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 406 GVRLRYHLRAGNSRHQAGGPSREVPCWSG 492
G+ +RY++ AG+ + + +REVPC G
Sbjct: 37 GLFVRYYVPAGDGKRRIRVDTREVPCGGG 65
>10_01_0081 -
1033837-1034090,1034500-1034686,1034713-1034941,
1035328-1035638
Length = 326
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -3
Query: 268 SGDGKSLEERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKAN 89
S GK L + R +A+ M+ D + + RT RGL + ++ I + G+D+
Sbjct: 219 SEQGKKLRDHVEARREATAMTWKDAARCPDELRTYRGLLERCGKLLSSIQAFTAGDDQQP 278
Query: 88 ISLDV 74
+ V
Sbjct: 279 CQMSV 283
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 455 PEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFK 571
PE R F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 448 HQAGGPSREVPCWSGQRGRALVVHRVPDGR 537
H AG P W G+R RA H +P GR
Sbjct: 13 HLAGQPPLLTAGWGGRRERARRSHAMPTGR 42
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 492 PTWPRSRCPSGTRRSRL 542
PT PRSR PS +RR R+
Sbjct: 149 PTTPRSRAPSSSRRRRM 165
>06_03_1442 -
30172595-30172606,30172607-30172684,30173034-30173435,
30173503-30173577,30173667-30173822,30173952-30174143,
30174202-30174208,30175866-30175918
Length = 324
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/90 (22%), Positives = 44/90 (48%)
Frame = +2
Query: 290 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLR 469
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A I +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 470 EKFLAGVANVAALSLSIGYPTVASAPHSIA 559
+ L VA S+ G+ +A H+++
Sbjct: 168 LRCLRQVAYKDTRSVITGWGRKLAALHALS 197
>06_03_1439 -
30157110-30157121,30157122-30157199,30157549-30157950,
30158018-30158092,30158182-30158337,30158467-30158658,
30158717-30158723,30160381-30160433
Length = 324
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/90 (22%), Positives = 44/90 (48%)
Frame = +2
Query: 290 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLR 469
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A I +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 470 EKFLAGVANVAALSLSIGYPTVASAPHSIA 559
+ L VA S+ G+ +A H+++
Sbjct: 168 LRCLRQVAYKDTRSVITGWGRKLAALHALS 197
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/90 (22%), Positives = 44/90 (48%)
Frame = +2
Query: 290 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLR 469
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A I +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 470 EKFLAGVANVAALSLSIGYPTVASAPHSIA 559
+ L VA S+ G+ +A H+++
Sbjct: 331 LRCLRQVAYKDTRSVITGWGRKLAALHALS 360
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/90 (22%), Positives = 44/90 (48%)
Frame = +2
Query: 290 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLR 469
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A I +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 470 EKFLAGVANVAALSLSIGYPTVASAPHSIA 559
+ L VA S+ G+ +A H+++
Sbjct: 331 LRCLRQVAYKDTRSVITGWGRKLAALHALS 360
>03_04_0243 + 19298293-19299117
Length = 274
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 201 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPTFP 82
+ TD+ + APG A A + S SRTS +P + PT P
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSP 209
>03_02_0966 + 12783515-12783901
Length = 128
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 482 AGVANVAALSLSIGYPTVASAPHSIANGFKN 574
AG+A VAA++ ++ P VA A +++ KN
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKN 97
>03_01_0610 +
4478521-4478715,4480003-4480090,4480255-4480321,
4480561-4480679,4480809-4480904,4481019-4481074,
4481400-4481485,4481914-4482048,4482216-4482300
Length = 308
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 389 GLVVKQVYDSGTIFAPAILDI--KPEDLREKFLAG-VANVAALSLSIGYPTVASAPHSIA 559
G ++V+D + L++ P KFLA + + + YP A A H I
Sbjct: 130 GAGTERVFDEVIQYNDGSLEVAFSPSKAMGKFLASELPRTTETTCKVLYPASAKAGHEIQ 189
Query: 560 NGFKN 574
NG N
Sbjct: 190 NGLSN 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,774
Number of Sequences: 37544
Number of extensions: 369198
Number of successful extensions: 1184
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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