Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M08
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    31   0.027
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    31   0.036
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   1.8  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    24   3.1  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    24   3.1  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    24   4.1  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    23   5.5  
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    23   7.2  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    23   7.2  
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    23   7.2  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    23   7.2  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    23   7.2  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    23   9.6  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    23   9.6  

>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 31.1 bits (67), Expect = 0.027
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 174 GIYRYPRKVHKTDWEKIKFTSRSKIKPFVK 263
           G+ RYP KV K+   K +   RS++KPF+K
Sbjct: 45  GVERYPLKVTKSMGAK-RIAKRSRVKPFIK 73


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 30.7 bits (66), Expect = 0.036
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 174 GIYRYPRKVHKTDWEKIKFTSRSKIKPFVK 263
           G+ RYP KV K+   K +   RS++KPF+K
Sbjct: 45  GVERYPLKVTKSMGAK-RIARRSRVKPFIK 73


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 203 MNLARVSVDAGTKACPYGL 147
           + LAR +  AGTK CPY +
Sbjct: 695 IELARDAYLAGTKVCPYSI 713


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 189 PRKVHKTDWEKIKFTSRS 242
           PRKVH +D  +IK  SRS
Sbjct: 483 PRKVHFSDTLEIKHVSRS 500


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 86  QHHFSSFNYPLDESVSSDSQPGGSCLD 6
           Q  F +  YPL+E V  +++    C+D
Sbjct: 224 QADFPALKYPLEEHVEENAKEEQRCID 250


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 124 YDNGFKLRTAVRTSTTFPVSITHWMNPSRPILSP 23
           Y NG +   ++  +  + V++T+W + SR   +P
Sbjct: 260 YKNGSRNVPSILLAALYSVALTYWPSDSRSFGAP 293


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 143 DVPLVSLRQWL*AAYRREDQHHFSSFNYPLDES 45
           ++P V    WL ++++      F+ F  PLD+S
Sbjct: 373 NIPTVH-HSWLYSSFKNLSSQAFTDFPVPLDDS 404


>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 107 LKAIVVKKREAHLTNHTDMLSSRHLQIP 190
           LK + V+K+E    N+   L + HL+ P
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFP 150


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 77  SGAGPHGGTQLKAIV-VKKREAHLTNHTDMLSSR 175
           +G GP   ++    V V  +  HL NH D++ +R
Sbjct: 116 TGCGPLSASKKDLSVNVYSKGCHLMNHDDVIGTR 149


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 107 LKAIVVKKREAHLTNHTDMLSSRHLQIP 190
           LK + V+K+E    N+   L + HL+ P
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFP 150


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 159 TCFRPGIYRYPRKVHKT 209
           T    G YRY RK+H T
Sbjct: 371 TLLTSGWYRYARKIHYT 387


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 213 NPFYEPCAGICRCRDESMSVW 151
           NP+ E C    +  +ES+ +W
Sbjct: 632 NPYVEYCKQHVKLEEESLKIW 652


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -3

Query: 166 KHVRMVCQMCLSFLYDNGFKLRTAVRTSTTFPVSITHWMNPSRPILSPGD 17
           K  R++    L F    G  L T++RT+ +       ++NP   +  P D
Sbjct: 824 KDGRVIVFQQLDFTRTVGVLLGTSIRTNASDCTLEVAYLNPQNNLKRPSD 873


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 127 LYDNGFKLRTAVRTSTTFPVSITHWM 50
           LYD G K   ++  S+ FP   T W+
Sbjct: 44  LYDYGSKSTMSLPVSSLFPALQTLWI 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,961
Number of Sequences: 5004
Number of extensions: 23210
Number of successful extensions: 64
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)