Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M08
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0153 - 5961910-5962441,5962779-5963128,5963415-5963681,596... 28 1.2
07_03_0522 - 19021915-19022649,19022725-19023012,19023091-190235... 27 2.1
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743... 27 2.1
03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661,397... 26 3.6
07_03_1242 + 25113464-25114150 26 4.8
11_06_0475 - 24042889-24043226,24043621-24043714 25 6.3
10_08_0951 - 21769342-21769752 25 6.3
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 25 6.3
02_02_0470 - 10700092-10700505 25 6.3
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993 25 8.3
05_04_0187 - 18878500-18879224,18879971-18880043 25 8.3
03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339... 25 8.3
>03_02_0153 -
5961910-5962441,5962779-5963128,5963415-5963681,
5964149-5964379
Length = 459
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 257 ERLDFRPACEFYFFPIRFMNLARVSVDAG--TKACPYGLSDVPLV 129
ER+ FRP+ F+P +F R + G T+ P ++DV ++
Sbjct: 61 ERISFRPSFSIKFYPAKFSKELRSILPVGDITECIPDEVADVAVL 105
>07_03_0522 -
19021915-19022649,19022725-19023012,19023091-19023548,
19023939-19024329,19024422-19024668,19024742-19024815,
19024905-19024961
Length = 749
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 201 EPCAGICRCRDESMSVWFV 145
EP AG C C E+ S+WF+
Sbjct: 725 EPAAG-CLCTRENFSIWFI 742
>07_01_1156 -
10873223-10873417,10873498-10873579,10874235-10874336,
10874456-10874553,10874692-10874778,10874869-10875317,
10875414-10875744,10875766-10875884,10875935-10876124,
10876319-10876657,10876735-10876875,10876958-10877440,
10877703-10877901,10879447-10879643
Length = 1003
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 212 IRFMNLARVSVDAGTKACPYGLSDVPLV 129
IR N +V++D GT + P+G D+ V
Sbjct: 874 IRNQNNLQVALDTGTNSSPFGFGDLSTV 901
>03_01_0530 +
3971990-3972331,3972415-3972489,3972608-3972661,
3972747-3972825,3972927-3973054,3973178-3973261,
3973344-3973427,3973518-3973669,3973810-3973960,
3974675-3974746,3975708-3975749
Length = 420
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 32 NRTRRIHPMGN*NWKSGAGPHGGTQLK 112
++ RR +G+ NW S +GP QLK
Sbjct: 355 DKRRRTFRVGSLNWFSNSGPTNNEQLK 381
>07_03_1242 + 25113464-25114150
Length = 228
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -1
Query: 198 PCAGICRCRDESMSVWFVRCASRFFTTMALSCVPP*G 88
P G C S+W RC F + + CV P G
Sbjct: 139 PARGECAACHRDCSIWHYRCGLCLF-MLHIGCVSPAG 174
>11_06_0475 - 24042889-24043226,24043621-24043714
Length = 143
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 174 RDESMSVWFVRCASRFFTTMALSCVP 97
RDES WF RCAS +A+ P
Sbjct: 44 RDES--TWFARCASLLSLALAIVVAP 67
>10_08_0951 - 21769342-21769752
Length = 136
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 136 GTSDKPYGHAFVPASTDTRARFIKRIGKK*NSQAGR 243
GT D+PYGH V + I++ K ++ R
Sbjct: 32 GTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSR 67
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 2 GRLNMIPRAENRTRRIHPMGN*NWKSGAGPHGGTQLKAIVVKKREA 139
GRLN P E+ + P GAGP GGT + + + + A
Sbjct: 73 GRLNYFPAGESGGGDVSPT------IGAGPRGGTGMSVVNSRVKRA 112
>02_02_0470 - 10700092-10700505
Length = 137
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 136 GTSDKPYGHAFVPASTDTRARFIKRIGKK*NSQAGR 243
GT D+PYGH V + I++ K ++ R
Sbjct: 32 GTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSR 67
>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
Length = 678
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +2
Query: 17 IPRAENRTRRIHPMGN*NWKSGAGPHGGTQLKAIVVKKREAHLTNHTDMLSSRHLQIPAQ 196
IP ++ ++I N N + + GG L +I + N+T+ +++ I A
Sbjct: 63 IPENDHVYKKIEKAYNRNVRDNSKSTGGVTLPSIASSEERLAKHNNTEKVTNGRSHIGAF 122
Query: 197 GS*NGLGKN 223
S +G G++
Sbjct: 123 SSESGSGES 131
>05_04_0187 - 18878500-18879224,18879971-18880043
Length = 265
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 100 TAVRTSTTFPVSITHWMNPSRPILSPGDH 14
TA + PV + PSRP L P DH
Sbjct: 46 TAAAAAAQPPVPLALAAPPSRPCLRPDDH 74
>03_03_0145 +
14833043-14833113,14833544-14833662,14833834-14833991,
14834147-14834587
Length = 262
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 183 RYPRKVHKTDWEKIK 227
+ PRKVHK++ EK+K
Sbjct: 34 KVPRKVHKSEREKLK 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,228,192
Number of Sequences: 37544
Number of extensions: 167801
Number of successful extensions: 433
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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