Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M08
(267 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 37 0.002
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 37 0.002
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p... 27 2.4
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein. 27 2.4
Z81056-9|CAB02908.2| 292|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical pr... 26 4.2
U53150-2|AAV28350.1| 580|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical pr... 25 5.6
AF016444-2|AAN73877.1| 320|Caenorhabditis elegans Serpentine re... 25 5.6
U29614-8|AAA68812.2| 395|Caenorhabditis elegans Hypothetical pr... 25 7.4
U13643-4|AAA21082.2| 258|Caenorhabditis elegans Hypothetical pr... 25 7.4
U88309-6|AAB42332.1| 389|Caenorhabditis elegans Hypothetical pr... 25 9.7
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 36.7 bits (81), Expect = 0.002
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +3
Query: 60 VIETGKVVLVLT---AVRSLKPLS*RNERHI*QTIRTCFRPGIYRYPRKVHKTDWEKIKF 230
+++ GKVVLVL A R + ++E +T GI RYP KV K D K K
Sbjct: 4 IMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTK-DMGKKKI 62
Query: 231 TSRSKIKPFVK 263
R+K+KPF+K
Sbjct: 63 EKRNKLKPFLK 73
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 36.7 bits (81), Expect = 0.002
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +3
Query: 60 VIETGKVVLVLT---AVRSLKPLS*RNERHI*QTIRTCFRPGIYRYPRKVHKTDWEKIKF 230
+++ GKVVLVL A R + ++E +T GI RYP KV K D K K
Sbjct: 4 IMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTK-DMGKKKI 62
Query: 231 TSRSKIKPFVK 263
R+K+KPF+K
Sbjct: 63 EKRNKLKPFLK 73
>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
T04A8.14 protein.
Length = 1521
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 157 RMVCQMCLSFLYDNGFKLR 101
R CQ C+S+++DN ++R
Sbjct: 1435 RQPCQFCISYMFDNTERIR 1453
>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 157 RMVCQMCLSFLYDNGFKLR 101
R CQ C+S+++DN ++R
Sbjct: 1435 RQPCQFCISYMFDNTERIR 1453
>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
Length = 1521
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 157 RMVCQMCLSFLYDNGFKLR 101
R CQ C+S+++DN ++R
Sbjct: 1435 RQPCQFCISYMFDNTERIR 1453
>Z81056-9|CAB02908.2| 292|Caenorhabditis elegans Hypothetical
protein F09F3.11 protein.
Length = 292
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 260 YERLDFRPACEFYFFPIRF 204
Y L FRP C F F+P F
Sbjct: 124 YTCLGFRPNCGFVFYPATF 142
>Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical
protein C56A3.4 protein.
Length = 221
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 124 YDNGFKLRTAVRTSTTFPVSITHWMNPSRPILS 26
+D FKL V T PV IT+W + P+ S
Sbjct: 20 FDYIFKLFYPVYYFVTIPVRITNWFFTNFPVFS 52
>Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical
protein T24D5.5 protein.
Length = 408
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 163 HVRMVCQMCLSFLYDNGFKLRTAV 92
H R +C MCL + + N F+ TA+
Sbjct: 62 HARFLCSMCL-YGFSNNFRSLTAI 84
>Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical
protein F27E5.3 protein.
Length = 490
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 183 CRCRDESMSVWFVRCASRFFTTMALSCVP 97
C CRD++ V R SRFF CVP
Sbjct: 24 CACRDKNQMVKRKREDSRFFFAHYGCCVP 52
>U53150-2|AAV28350.1| 580|Caenorhabditis elegans Hypothetical
protein F20A1.4 protein.
Length = 580
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 212 IRFMNLARVSVDAGTKACPY 153
+RF+N +S+D GT C +
Sbjct: 277 VRFVNFMNISIDKGTVECSF 296
>Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical
protein T01B4.2c protein.
Length = 712
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 266 TFYERLDFRPACEFYFFPIRFMNLARVSVDAGTKACPYGLSDVPL 132
+F+E+ DF A F+F + + V + AC GL ++ +
Sbjct: 334 SFWEKWDFLTAFYFFFVSLSTIGFGDVIPEHPRTACGNGLLEIKI 378
>Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical
protein T01B4.2b protein.
Length = 733
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 266 TFYERLDFRPACEFYFFPIRFMNLARVSVDAGTKACPYGLSDVPL 132
+F+E+ DF A F+F + + V + AC GL ++ +
Sbjct: 355 SFWEKWDFLTAFYFFFVSLSTIGFGDVIPEHPRTACGNGLLEIKI 399
>Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical
protein T01B4.2a protein.
Length = 757
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 266 TFYERLDFRPACEFYFFPIRFMNLARVSVDAGTKACPYGLSDVPL 132
+F+E+ DF A F+F + + V + AC GL ++ +
Sbjct: 379 SFWEKWDFLTAFYFFFVSLSTIGFGDVIPEHPRTACGNGLLEIKI 423
>AF016444-2|AAN73877.1| 320|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 10 protein.
Length = 320
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 160 VRMVCQMCLSFLYDNGFKLRTAVRTST 80
V+++ ++C FL+ KLR+ TST
Sbjct: 188 VQIIARICFQFLFKQNEKLRSEQLTST 214
>U29614-8|AAA68812.2| 395|Caenorhabditis elegans Hypothetical
protein F18E9.7 protein.
Length = 395
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 77 SGAGPHGGTQLKAIVVKKREAHLTNHTDMLSSRHLQI 187
SG+G GG + +E +L +H+D+L+S + ++
Sbjct: 33 SGSGDFGGEISDLASLTGQEDYLNDHSDILASSNNEV 69
>U13643-4|AAA21082.2| 258|Caenorhabditis elegans Hypothetical
protein T07E3.3 protein.
Length = 258
Score = 25.0 bits (52), Expect = 7.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 266 TFYERLDFRPACEF 225
+ +ER+DF P C+F
Sbjct: 30 SLFERIDFEPVCDF 43
>U88309-6|AAB42332.1| 389|Caenorhabditis elegans Hypothetical
protein T23B3.1 protein.
Length = 389
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 248 DFRPACEFYFFPIRFMNLARV 186
DFRP F+FF I ++N ++
Sbjct: 235 DFRPTYIFFFFCIFYVNRTKI 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,863,642
Number of Sequences: 27780
Number of extensions: 136412
Number of successful extensions: 342
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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