Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M07
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    25   7.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    24   9.8  

>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 158 YVIFTMLIRISNIYVIHIY 214
           ++IFT+L+ IS++YV+  Y
Sbjct: 17  FLIFTVLLYISSVYVLPRY 35


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 324 IINYVIN*LYNRIKAYSRFVQYNPF 250
           ++ Y IN   + + AYSR ++ NP+
Sbjct: 626 VLYYQINQYQDALDAYSRAIRLNPY 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,892
Number of Sequences: 5004
Number of extensions: 34176
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)