Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M06
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 30 0.27
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 28 0.84
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 28 1.1
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 1.9
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 3.4
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 26 3.4
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po... 26 4.5
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 5.9
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 7.8
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 29.9 bits (64), Expect = 0.27
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 333 NISITSGTADGCFVD---SSNKVLLCEDSGAVSIWTR 434
++S+ + A+ C D + N +L C D+G +S+W++
Sbjct: 70 DVSVPTDIANACIRDMCFTKNHLLACHDNGQISMWSK 106
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 28.3 bits (60), Expect = 0.84
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 294 ISQAKNLHREENKNISITSGTADGCFVDSSNKVLLCEDSGAVSIWTRA 437
IS+A H NK +S+ GC SS+ +LC+ + + RA
Sbjct: 1411 ISKAVTQHNAYNKKLSLLFDICRGCSKLSSSDPVLCKSNSCKVYYDRA 1458
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/66 (22%), Positives = 27/66 (40%)
Frame = +3
Query: 138 HLNAEVYRXXXXXXXXLSDLDYIFIHDDGNVLIGCSELTGRYWNGGVCIFDDISQAKNLH 317
H+ Y S +D + + +GN L+ CS +W D+ S + NL
Sbjct: 266 HILPNKYERIIGQHSSRSTVDAVDVTTEGNFLVSCSGTELAFWPVDQKEGDESSSSDNLD 325
Query: 318 REENKN 335
+E+ +
Sbjct: 326 SDEDSS 331
Score = 26.2 bits (55), Expect = 3.4
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 366 CFVDSSNKVLLCEDSGAVSIWTRADKDKQSAWYYWAEEISVAEHDDSALAVDCLDPGTEY 545
CF N+VLL +G VS + + D + S W S H S + + GTE+
Sbjct: 22 CF--GENQVLLGFSNGRVSSY-QYDVAQISLVEQW----STKRHKKSCRNISVNESGTEF 74
Query: 546 VTVRADG 566
++V +DG
Sbjct: 75 ISVGSDG 81
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 192 DLDYIFIHDDGNVLIGCSELTGRYWNGGVCIF 287
DLD ++D +V CS +T W+ V ++
Sbjct: 279 DLDDYTVYDGASVTSNCSSITNEQWSYNVGVY 310
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 3.4
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 544 YSVPGSRQSTARAESSCSATDISSAQ*YHALCLSLSARVHILTAPLSSHNN 392
YS+PG +T SS S+ D S+ + L S S + TA HNN
Sbjct: 450 YSIPGKTVATTVCHSSSSSGDFSALSCHRNLSFSES----LPTAEDQVHNN 496
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 444 DKQSAWYYWAEEISVAEHDDSAL 512
D Q+ YW + I EHDD A+
Sbjct: 82 DAQALAEYWQKTIDTLEHDDQAV 104
>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 164
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 173 GRISSIYFSIKMWWYNLITIFHCSNLG 93
G + S FSI W +++IF C LG
Sbjct: 16 GELKSYNFSIYAQWLGILSIFLCIILG 42
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 456 AWYYWAEEISVAEHDDSALAVDCLDPGTEYVTVRADG 566
AWY EEI + EHD A+ L Y +++ G
Sbjct: 1034 AWYLLDEEIQLTEHDSIEDALTALKLYDCYDKLKSQG 1070
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 415 APLSSHNNTLLELSTKHPSAVPL 347
APLS+ L+ L T HPS + L
Sbjct: 181 APLSTMQTALMRLRTYHPSPIIL 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,931
Number of Sequences: 5004
Number of extensions: 42070
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -