Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M06
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0036 + 298626-299573,299973-300239                               29   2.6  
04_04_1194 - 31643422-31643511,31643695-31643805,31643892-316444...    28   4.6  

>07_01_0036 + 298626-299573,299973-300239
          Length = 404

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = -3

Query: 188 QSGGAGRIS----SIYFSIKMWWYNLITIFH 108
           + GG  R+S    S+    K+WWYN+   FH
Sbjct: 253 EKGGVRRLSARKVSLLMDDKLWWYNVFAPFH 283


>04_04_1194 -
           31643422-31643511,31643695-31643805,31643892-31644406,
           31644456-31644756
          Length = 338

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 408 SGAVSIWTRADKDKQSAWYYWAEEIS-VAEHD 500
           SGA   W R  KDK+S W+    E+  +  HD
Sbjct: 119 SGATRSWRRCGKDKRSIWFNAPVEVDRLGLHD 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,707
Number of Sequences: 37544
Number of extensions: 256794
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)