Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M06
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein...    31   0.77 
AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein...    31   0.77 
AC024810-13|AAK68518.1|  405|Caenorhabditis elegans Feminization...    31   0.77 
AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization...    31   0.77 
U40959-5|AAA81769.1|  531|Caenorhabditis elegans Udp-glucuronosy...    28   5.4  
U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 234 IGCSELTGRYWNGGVCIFDDISQAKNLHREENKNISI 344
           +GC E  G ++N  + I+D +  AK+ H++E K   I
Sbjct: 404 VGCDECGGLWFNPFLSIYDHLKCAKDDHQKEQKMAEI 440


>AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 234 IGCSELTGRYWNGGVCIFDDISQAKNLHREENKNISI 344
           +GC E  G ++N  + I+D +  AK+ H++E K   I
Sbjct: 404 VGCDECGGLWFNPFLSIYDHLKCAKDDHQKEQKMAEI 440


>AC024810-13|AAK68518.1|  405|Caenorhabditis elegans Feminization of
           germline protein1, isoform a protein.
          Length = 405

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 234 IGCSELTGRYWNGGVCIFDDISQAKNLHREENKNISI 344
           +GC E  G ++N  + I+D +  AK+ H++E K   I
Sbjct: 190 VGCDECGGLWFNPFLSIYDHLKCAKDDHQKEQKMAEI 226


>AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization of
           germline protein1, isoform b protein.
          Length = 619

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 234 IGCSELTGRYWNGGVCIFDDISQAKNLHREENKNISI 344
           +GC E  G ++N  + I+D +  AK+ H++E K   I
Sbjct: 404 VGCDECGGLWFNPFLSIYDHLKCAKDDHQKEQKMAEI 440


>U40959-5|AAA81769.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein46 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 189 SDLDYIFIHDDGNVLIGCSELTGRYWNGGVCIFDDISQAKNLHREE 326
           SD+D IF+  D  + I  + L      GG+ + DD+++  N+   E
Sbjct: 241 SDVDVIFVATDEIIDISTTTLQNIVHVGGLGVDDDVAEMDNVFASE 286


>U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK813.4a protein.
          Length = 171

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 282 IFDDISQAKNLHREENKNISITSGTADGCFVD 377
           I+DDI    N HRE  K +   S   DG  +D
Sbjct: 138 IYDDICDIINKHRERPKIVQYNSIDIDGVEID 169


>U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical
           protein ZK813.4b protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 282 IFDDISQAKNLHREENKNISITSGTADGCFVD 377
           I+DDI    N HRE  K +   S   DG  +D
Sbjct: 119 IYDDICDIINKHRERPKIVQYNSIDIDGVEID 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,277,142
Number of Sequences: 27780
Number of extensions: 235322
Number of successful extensions: 633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)