Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M06
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.5  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   8.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 173 GRISSIYFSIKMWWYNLITIFHCSNLGP 90
           G I   Y S+ +   NL+ +FH   + P
Sbjct: 72  GVIGGSYSSVSLQVANLLRLFHIPQISP 99


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 173 GRISSIYFSIKMWWYNLITIFHCSNLGP 90
           G I   Y S+ +   NL+ +FH   + P
Sbjct: 162 GVIGGSYSSVSLQVANLLRLFHIPQISP 189


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -3

Query: 335 IFIFFSMKVFCLTDIIKDTNTSIP 264
           +F+F ++  +CL +I+   + + P
Sbjct: 316 VFVFMALMEYCLVNIVLGDSDTPP 339


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 500 IMLCHRYFFCPIVPC 456
           ++L   YF  P++PC
Sbjct: 14  VILITSYFVTPVMPC 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,441
Number of Sequences: 438
Number of extensions: 2909
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)