Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M05
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 27 0.80
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.1
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 1.4
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 2.4
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 25 3.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.3
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 25 4.3
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 4.3
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 5.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 5.6
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 25 5.6
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 24 9.8
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 24 9.8
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 24 9.8
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 27.5 bits (58), Expect = 0.80
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 148 EEPELMQRCWEVIDAHAEMALTSEGFVDIDVSTLESLLARETLNCKEI 291
EE +L R W+ ++ EM EGF+ D +L+ L R K I
Sbjct: 5 EEIDLYNR-WKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRI 51
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 1.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 275 SVSLANSDSSVDTSMSTKPSDVRAISA*ASITSQHLCINSGS 150
+V++ S SS TS S PS A++ AS S H +N+G+
Sbjct: 252 TVTVTPSSSSSSTS-SEVPSSTAALALNASKASNHTSLNAGA 292
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 100 LTAKNACLLLSQSRLFEEPELMQRCWEVIDAHAEMALTSEGFV 228
+T + A L +S L P+++ + W++ DA LT GFV
Sbjct: 28 ITGEEAVPFLEKSGL--APQVLGQIWQIADAENRGFLTFSGFV 68
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 2.4
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 293 FISLQLSVSLANSDSSVDTSMSTKPSDVRAISA*ASITSQHLCINSGSSNNLDWLNSRQA 114
F+SL + LAN+ S + K + + TSQ + I+ N +W++SR+
Sbjct: 8 FVSLLGAAGLANALPSPGIPSNDKDLAIYPPVDANNTTSQDVVIDVVLFNGTEWISSRER 67
Query: 113 FFAV 102
F V
Sbjct: 68 FSLV 71
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 2.4
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 275 SVSLANSDSSVDTSMSTKPSDVRAISA*ASITSQHLCINSGSSNNLDWLNSRQAF 111
S+S ++ DSS +S S S + +I + A I + +NSG S L S F
Sbjct: 373 SISTSSMDSSAVSSYSVVQSSLASIISNAYIATSKSGLNSGVSTLLASPTSSSTF 427
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 3.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 112 NACLLLSQSRLFEEPELMQRCWEVIDAHAEMAL 210
+AC L + +EE +MQ+C +I A+A+ L
Sbjct: 150 SACYLFIRKDYYEETVMMQKC--IIQAYAKKLL 180
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 4.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = -3
Query: 272 VSLANSDSSVDTSMSTK-----PSDVRAISA*ASITSQHLCINSGSS 147
+S N+ SSVDTS+S+ P+ + +A S++S + +S SS
Sbjct: 1 MSFTNNTSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSS 47
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 4.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 19 VLSTLYVAKKYIVPHLAK 72
VL Y+ ++Y++PH+AK
Sbjct: 104 VLRGNYLTQRYVIPHMAK 121
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 61 HLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDAHAEMALTSEGFVDID 237
H C L S+ + +L++ SRL +P+L E + + A + F D D
Sbjct: 810 HSLMLCCYELPVSIRKQLPAILVTLSRLITKPDLSVHILEFLCSLARLPDLIANFTDAD 868
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 24.6 bits (51), Expect = 5.6
Identities = 21/80 (26%), Positives = 32/80 (40%)
Frame = +1
Query: 22 LSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDAHAE 201
LSTL + + + C + L K AC LLS L+ + EV+D
Sbjct: 162 LSTLLPNNFELCIDVFQKCTTQCQRELIIKKACYLLSDVSLYGPRFAYKYIIEVLDRGLG 221
Query: 202 MALTSEGFVDIDVSTLESLL 261
+ T V+I + L +L
Sbjct: 222 PS-TQMSEVNISIKLLNEIL 240
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +1
Query: 151 EPELMQRCWEVIDAHAEMALTSEGFVDIDVSTLESLLARETLNCKEINLFEA 306
E E Q+ E+I HA+ A +G +++S+++ L + L+ + +N ++
Sbjct: 232 EREDYQKYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQS 283
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 5.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 19 VLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQS 138
+L V K + P+ A NYL + TAK+ LL + S
Sbjct: 22 LLQAKVVVCKSVNPYFNLALENYLYENSTAKHCLLLYTNS 61
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 23.8 bits (49), Expect = 9.8
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 263 ANSDSSVDTSMSTKPSDVRAISA*ASITSQHLCINSGS-SNNLDWLNSRQ 117
A S D +S SD+R I + C NSG+ S+NL ++ +
Sbjct: 13 ATSQCKEDLKVSLSESDLRDSQGQLGIENPPKCNNSGNHSDNLGFIEQSE 62
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 160 LMQRCWEVIDAHAEMALTSEGFVDIDVST 246
L+Q ++V+D A L +EG+++ +ST
Sbjct: 539 LIQSKFDVLDKKAVSFLENEGYLESQIST 567
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 82 NYLETSLTAKNACLLLSQSRLFEEPELMQR 171
N LE +TAK+ C++ + + E +QR
Sbjct: 102 NILEPVITAKHTCIVYNSTGAIGVEEALQR 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,212
Number of Sequences: 5004
Number of extensions: 25118
Number of successful extensions: 80
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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