Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M05
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382... 40 0.001
08_01_0200 + 1632883-1633913,1634620-1634677 35 0.027
08_01_0203 + 1639993-1641141 30 0.59
01_06_1733 + 39537618-39537722,39537865-39538028,39539796-395401... 30 0.78
08_01_0657 + 5674907-5674993,5675615-5676583 29 1.8
08_02_1304 - 26008105-26009070 28 2.4
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 28 2.4
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504... 28 2.4
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 4.1
06_03_1064 - 27300735-27301829 27 5.5
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13... 27 7.2
11_06_0128 - 20389375-20389781,20389988-20392787 27 7.2
06_02_0086 - 11567390-11567634,11568316-11568341,11571082-115712... 27 7.2
08_02_0624 - 19434168-19435352 26 9.6
>01_06_1640 +
38836977-38836988,38837694-38838047,38838164-38838294,
38838554-38838860,38839036-38839349,38839507-38839645
Length = 418
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 19 VLSTLYVAKKYIVPHLAKACVNYLETS-LTAKNACLLLSQSRLFEEPELMQRCWEVIDAH 195
VL L ++ + VP L + C+N LETS L+ +N +L +RL + P L C +I
Sbjct: 176 VLHLLVLSHVFSVPSLKRVCINQLETSLLSPENVVDILQLARLCDAPRLSLVCTRMIIGD 235
Query: 196 AEMALTSEGF 225
+ +EG+
Sbjct: 236 FKAITQTEGW 245
>08_01_0200 + 1632883-1633913,1634620-1634677
Length = 362
Score = 34.7 bits (76), Expect = 0.027
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDA 192
D L A +Y V L C L SL + ++ + EL + C E ID+
Sbjct: 260 DMARHLLVAADRYAVERLRVICERVLRRSLGVETVIDTMALAEQHSCGELKEACLEFIDS 319
Query: 193 HAEMALTSEGFVDI 234
H++ + S+G+ ++
Sbjct: 320 HSKRIVESDGYKNL 333
>08_01_0203 + 1639993-1641141
Length = 382
Score = 30.3 bits (65), Expect = 0.59
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRL-FEEPELMQRCWEVI 186
DTV +TL +A ++ L +AC+ +L TS + ++ P M WE+I
Sbjct: 305 DTVAATLAMADQHHCQKLKEACIEFLATSKKMEGVMESQGYEKMKLSCPSFMVDLWEII 363
>01_06_1733 +
39537618-39537722,39537865-39538028,39539796-39540102,
39540914-39541221,39541421-39541580
Length = 347
Score = 29.9 bits (64), Expect = 0.78
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 31 LYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVI 186
L +A Y VP L + C + + LTA++ + + L + P+L RC ++
Sbjct: 105 LVLAHAYRVPWLKRRCEGAIGSRLTAESVVDTMQLAALCDAPQLHLRCTRLL 156
>08_01_0657 + 5674907-5674993,5675615-5676583
Length = 351
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 76 CVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDAHAEMALTSEGFVDIDVST 246
C L T + A L+ + P L RC EV+ A+ + + +EG+ + S+
Sbjct: 279 CEEKLIAGATVETAATTLALAEQHGCPRLKARCVEVVAANLDAVMATEGYKHLMASS 335
>08_02_1304 - 26008105-26009070
Length = 321
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVI-- 186
D + L A ++ + L C L S++ + L + + PEL RC +++
Sbjct: 229 DLLQRLLAAADRFALERLKLMCAQKLWESVSVETVIATLCCAEMHSCPELKNRCIDLVVT 288
Query: 187 -DAHAEMALTSEGF 225
D E+A+T + F
Sbjct: 289 KDNFMEVAVTKDYF 302
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 52 IVPHLAKACVNYLETSLTAKNA 117
I P+LAK CVNYL++ L ++ A
Sbjct: 54 IQPNLAKDCVNYLKSGLPSRIA 75
>02_05_0691 -
30949234-30949243,30949613-30950001,30950425-30950449,
30950594-30950688,30950842-30951359,30951652-30951736,
30951842-30952633
Length = 637
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/52 (21%), Positives = 31/52 (59%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQ 168
DT+ S + A+K LA + + + ++ K++C+ + ++R F++ ++++
Sbjct: 218 DTIASDDWAARKAAAEALAALALEHKDLLVSYKSSCITMFEARRFDKVKIVR 269
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 37 VAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEP 156
VA +VP LAK C N+ +N LLSQ+R+ E P
Sbjct: 119 VAHTIVVPTLAKRCFNFDGRDHHEENVD-LLSQTRVEETP 157
>06_03_1064 - 27300735-27301829
Length = 364
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLS 132
DTV +TL +A+++ HL CV ++ TA+N +L+
Sbjct: 299 DTVSTTLALAEQHDCSHLKAKCVEFIAAG-TAENLDAVLA 337
>12_01_0019 -
135627-135983,136564-136797,137118-137196,137268-137383,
137847-137991,138177-138594,138644-138649,139315-139945
Length = 661
Score = 26.6 bits (56), Expect = 7.2
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Frame = +1
Query: 16 TVLSTLYVAKKY-IVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDA 192
+ LSTL + + +VPHL + +T K + R E + +R +E +D
Sbjct: 163 STLSTLSLTELIDLVPHLVARSLPSPDTHPDKKKLFSVHHFFRYAEFEDGGKRFFEELDR 222
Query: 193 HAEMALTSEGF-VDIDVSTLESLLARETLNCKEINLFEAALAWAHAECVRTEIDPT 357
+ +T E + + L AR+ L NLF ++ W + + +PT
Sbjct: 223 DGDGQVTLEDLEIAMRKRRLPRRYARDFLRRTRSNLFSKSIGWKQFLSLMEQKEPT 278
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 372 SFVCWCRINLCSHTLRMSP 316
+F+C + LCSH+L +SP
Sbjct: 6 AFICLLLVCLCSHSLALSP 24
>06_02_0086 -
11567390-11567634,11568316-11568341,11571082-11571224,
11571569-11571682,11571855-11572888,11574723-11575047,
11576843-11577124
Length = 722
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 154 PELMQRCWEVIDAHAEMALTSEGFVDIDVSTLES 255
P +Q WE D+ ++MAL S F D+ L S
Sbjct: 543 PSKLQSLWEEHDSRSKMALVSPYFFASDIPELIS 576
>08_02_0624 - 19434168-19435352
Length = 394
Score = 26.2 bits (55), Expect = 9.6
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 31 LYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDAHAEMA- 207
L A ++ + + C + L ++ NA L + P+L + C E I + +A
Sbjct: 301 LAAADRFDLERMRLLCEDALWETIDVANAAATLRLADRHHCPQLKELCMEYIASAGVLAA 360
Query: 208 -LTSEGFVDI 234
+T+EGF ++
Sbjct: 361 VMTTEGFREL 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,978,071
Number of Sequences: 37544
Number of extensions: 144323
Number of successful extensions: 399
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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