Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M05
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77660-9|CAB01179.1| 602|Caenorhabditis elegans Hypothetical pr... 119 9e-28
AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical ... 55 2e-08
Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical pr... 40 9e-04
U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein. 40 9e-04
AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear recep... 30 0.69
AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear horm... 30 0.69
AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear horm... 30 0.69
Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical pr... 29 1.2
AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical... 27 3.7
Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical pr... 26 8.5
>Z77660-9|CAB01179.1| 602|Caenorhabditis elegans Hypothetical
protein F38H4.7 protein.
Length = 602
Score = 119 bits (286), Expect = 9e-28
Identities = 57/126 (45%), Positives = 83/126 (65%)
Frame = +1
Query: 10 ADTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVID 189
A++V++TLY AKKY VP + K CV +L+ L NA ++LSQ++LF+EP+LMQ+C EVID
Sbjct: 263 AESVMTTLYTAKKYAVPAMEKECVRFLKQRLVPDNAFMMLSQAKLFDEPDLMQKCLEVID 322
Query: 190 AHAEMALTSEGFVDIDVSTLESLLARETLNCKEINLFEAALAWAHAECVRTEIDPTPTNK 369
+ AL EGF +ID+ TL +L R+ L +EI LF+A L WA E R + ++
Sbjct: 323 KNTLEALNGEGFTEIDLDTLCEVLTRDGLRIREIFLFQAVLRWAKFEAERRGMPANGDSR 382
Query: 370 RVMLGQ 387
R +L +
Sbjct: 383 RAVLSR 388
>AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical
protein C05C8.6 protein.
Length = 581
Score = 55.2 bits (127), Expect = 2e-08
Identities = 28/102 (27%), Positives = 50/102 (49%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDA 192
D +L L +A +Y + L A Y + L +N C + + + F+ +L+ C + D
Sbjct: 136 DILLEYLSLAHRYDLIQLMTAISEYFKEILKNENLCSIFNAAYFFQFTDLIDYCMQYSDK 195
Query: 193 HAEMALTSEGFVDIDVSTLESLLARETLNCKEINLFEAALAW 318
HA+ L F + +L+ LLAR++ E+ +F A +W
Sbjct: 196 HADQLLEDPSFNRLSGDSLKELLARDSFFALELKIFNAVRSW 237
>Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical
protein ZK858.4 protein.
Length = 395
Score = 39.5 bits (88), Expect = 9e-04
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDA 192
D + L A KY + L C YL ++ +NAC LL L+ P+L +R I A
Sbjct: 271 DMATALLIAADKYRLEELKSHCEKYLVENINIENACSLLIIGDLYSAPKLRKRAVTYILA 330
Query: 193 HAEMALTSEGFVDI 234
+ + G+ DI
Sbjct: 331 RPKNVTGTPGWEDI 344
>U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein.
Length = 395
Score = 39.5 bits (88), Expect = 9e-04
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDA 192
D + L A KY + L C YL ++ +NAC LL L+ P+L +R I A
Sbjct: 271 DMATALLIAADKYRLEELKSHCEKYLVENINIENACSLLIIGDLYSAPKLRKRAVTYILA 330
Query: 193 HAEMALTSEGFVDI 234
+ + G+ DI
Sbjct: 331 RPKNVTGTPGWEDI 344
>AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear receptor
NHR-58 protein.
Length = 395
Score = 29.9 bits (64), Expect = 0.69
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 184 IDAHAEMALTSEGFVDIDVSTLESLLARETLNCKEINLF-EAALAWAHAECVRT--EIDP 354
+ A +E+A ++ F+D+D L+ E +E+ F + W E V+ E+DP
Sbjct: 235 LSAKSEIAQSNGLFLDVDTLALDVSWISE-FKLEEVEFFIDGFRNWDLMELVQVFVELDP 293
Query: 355 TPTNKRVMLGQ 387
TP ML Q
Sbjct: 294 TPIELNYMLAQ 304
>AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform b protein.
Length = 324
Score = 29.9 bits (64), Expect = 0.69
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 184 IDAHAEMALTSEGFVDIDVSTLESLLARETLNCKEINLF-EAALAWAHAECVRT--EIDP 354
+ A +E+A ++ F+D+D L+ E +E+ F + W E V+ E+DP
Sbjct: 164 LSAKSEIAQSNGLFLDVDTLALDVSWISE-FKLEEVEFFIDGFRNWDLMELVQVFVELDP 222
Query: 355 TPTNKRVMLGQ 387
TP ML Q
Sbjct: 223 TPIELNYMLAQ 233
>AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform a protein.
Length = 393
Score = 29.9 bits (64), Expect = 0.69
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 184 IDAHAEMALTSEGFVDIDVSTLESLLARETLNCKEINLF-EAALAWAHAECVRT--EIDP 354
+ A +E+A ++ F+D+D L+ E +E+ F + W E V+ E+DP
Sbjct: 233 LSAKSEIAQSNGLFLDVDTLALDVSWISE-FKLEEVEFFIDGFRNWDLMELVQVFVELDP 291
Query: 355 TPTNKRVMLGQ 387
TP ML Q
Sbjct: 292 TPIELNYMLAQ 302
>Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical
protein F47A4.3b protein.
Length = 742
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEP 156
+T+ Y K+++ HL + C + T +T+KN ++ S + LF P
Sbjct: 378 ETMPEAHYRTAKFLMEHLTRLCKSKSLTDMTSKNLAIVWSPN-LFRPP 424
>Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical
protein F47A4.3a protein.
Length = 759
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 13 DTVLSTLYVAKKYIVPHLAKACVNYLETSLTAKNACLLLSQSRLFEEP 156
+T+ Y K+++ HL + C + T +T+KN ++ S + LF P
Sbjct: 395 ETMPEAHYRTAKFLMEHLTRLCKSKSLTDMTSKNLAIVWSPN-LFRPP 441
>AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical
protein R12E2.1 protein.
Length = 531
Score = 27.5 bits (58), Expect = 3.7
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +1
Query: 73 ACVNYLETSLTAKNACLLLSQSRLFEEPELMQRCWEVIDAHAEMALTSEGFVDIDVSTLE 252
AC +YL+ L N + + + EL+ E + + E F + V +L
Sbjct: 144 ACCDYLKKQLDPSNCLGIRAFADTHSCKELLSSADEFALKNFSRVIGKEEFQMLTVESLT 203
Query: 253 SLLARETLN-CKEINLFEAALAWAHAECVRTEIDPTPTNKRVML 381
+++ + LN E +F A + W VR +I T+ ++L
Sbjct: 204 TIIKSDKLNAASEELVFSAVIQW-----VRHDISKRKTHLSMLL 242
>Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical
protein F47G9.4 protein.
Length = 808
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 51 YCTTSGQSMCQLFRN*SHSKECLSTVK 131
YC T QS+C + RN +H S+ K
Sbjct: 85 YCETCQQSLCLVCRNVTHQARMFSSHK 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,167,056
Number of Sequences: 27780
Number of extensions: 142530
Number of successful extensions: 354
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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