Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M05
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   9.0  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 170 LCINSG---SSNNLDWLNSRQAFFAVRLVSK*LTHALARCGTIYFFAT 36
           +C+ +G   S NNL         + V ++   L HAL    TI++F T
Sbjct: 292 MCLIAGKIMSINNLTATAQMLGLYMVTVILGLLFHALITLPTIFWFLT 339


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 229 DIDVSTLESLLARETLNCKEINLFEAA 309
           D+DVST    L +E +    + L E A
Sbjct: 133 DVDVSTFFDQLGQEVIYTACVGLLERA 159


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 142 LFEEPELMQRCW 177
           +FEEP +M + W
Sbjct: 18  IFEEPSVMLKIW 29


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 253 SLLARETLNCKEINLFEAALAWA 321
           SLL R  L  K+   F    AWA
Sbjct: 105 SLLYRILLGAKDYQTFLKTAAWA 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,456
Number of Sequences: 438
Number of extensions: 1672
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)