Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M04
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   190   1e-49
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   189   1e-49
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    29   0.29 
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   2.7  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   2.7  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   6.3  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   8.4  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  190 bits (462), Expect = 1e-49
 Identities = 87/130 (66%), Positives = 103/130 (79%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMXKGHSCYRPRRDGERKRKSVRGCLVDANLSVLALVIVRKGAQE 391
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGC+V  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 392 IPGLTDGEVP 421
           IPGLTD  VP
Sbjct: 121 IPGLTDVTVP 130


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  189 bits (461), Expect = 1e-49
 Identities = 86/130 (66%), Positives = 103/130 (79%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMXKGHSCYRPRRDGERKRKSVRGCLVDANLSVLALVIVRKGAQE 391
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGC+V  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 392 IPGLTDGEVP 421
           IPGLTD  VP
Sbjct: 121 IPGLTDVTVP 130


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 276 EWPLXIKRRTRLLVRTPCFIGKPCLSLP 193
           EWPL +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 2   HEGSKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKR 124
           H G+KGL+       S+   G + +  ++ EH + + Y  R
Sbjct: 269 HLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIPVVYSHR 309


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 2   HEGSKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKR 124
           H G+KGL+       S+   G + +  ++ EH + + Y  R
Sbjct: 269 HLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIPVVYSHR 309


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 346 VSINKATTNRLAFPLTVTTWSVARVAFXHQETYTAVSQDSLFHREALLVVTAGNTENITF 167
           +S NKATTN      ++++  VAR      ET +A S  S   R +   VTA ++ +   
Sbjct: 631 ISPNKATTNIFTSQASLSSQGVAR------ETSSASSYRSYSQRASTPAVTAKSSFHYAT 684

Query: 166 P 164
           P
Sbjct: 685 P 685


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 74  LFEVVDEHKLRIFYEKRMGAEVDADLLGDEW 166
           +FE V EH L   Y+K +  ++D  L+   W
Sbjct: 349 VFEYVLEHTLPHLYQKIIELDMDLKLITINW 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,845
Number of Sequences: 5004
Number of extensions: 31367
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)