Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M04
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   176   7e-45
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   173   4e-44
11_04_0329 - 16442298-16443734                                         29   2.0  
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    29   2.0  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    27   8.1  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  176 bits (428), Expect = 7e-45
 Identities = 81/132 (61%), Positives = 102/132 (77%), Gaps = 2/132 (1%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMXKGHSCYR--PRRDGERKRKSVRGCLVDANLSVLALVIVRKGA 385
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGC+V  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 386 QEIPGLTDGEVP 421
            ++PGLTD E P
Sbjct: 121 NDLPGLTDTEKP 132


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  173 bits (422), Expect = 4e-44
 Identities = 80/132 (60%), Positives = 101/132 (76%), Gaps = 2/132 (1%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMXKGHSCYR--PRRDGERKRKSVRGCLVDANLSVLALVIVRKGA 385
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGC+V  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 386 QEIPGLTDGEVP 421
            ++PGLTD E P
Sbjct: 121 NDLPGLTDTEKP 132


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 393 ISCAPLRTMTRAKTERLASTRQPRTDLRFLSPSRRG 286
           + CAP   M       LAS+  P + LRF S  RRG
Sbjct: 77  LPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 121 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSL 14
           LF++ T  V +  F  L   RC V + +LH C Q+L
Sbjct: 76  LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNL 111


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +2

Query: 68  QKLF-EVVDEHKLRIFYEKR 124
           +KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,713,265
Number of Sequences: 37544
Number of extensions: 242853
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)