Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M03
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   7.0  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    22   9.3  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 129  FKKKLNTGQLPAVSEW 82
            F K++NT  L  +SEW
Sbjct: 1247 FAKRVNTETLSLISEW 1262


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +3

Query: 69  LLRTTIHLLQV 101
           +L+TT+HLLQV
Sbjct: 376 ILQTTVHLLQV 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,862
Number of Sequences: 5004
Number of extensions: 5089
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)