Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M02
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 215 3e-57
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 60 2e-10
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 54 1e-08
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 52 7e-08
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 29 0.43
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S... 28 0.99
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 1.3
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 27 1.7
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.0
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 26 3.0
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 3.0
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 4.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 5.3
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.0
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 9.2
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 25 9.2
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 215 bits (526), Expect = 3e-57
Identities = 99/171 (57%), Positives = 128/171 (74%)
Frame = +1
Query: 16 EGAQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAHQLIXXXXXXXXXX 195
+G QL++ GETTSHLMG FYRT+R+V+NGIKP +VFDGKPP LK+ +L
Sbjct: 50 DGQQLMNEQGETTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAR 109
Query: 196 XXLQKATEAGDQASIDKFNRRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVK 375
++ E G +D+F +R VKVTRQH++EAK LL+LMGIP V+APCEAEAQCAAL +
Sbjct: 110 EDQEETKEVGTAEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALAR 169
Query: 376 SGKVFAAATEDMDALTFGSPVLLRHLTFSEARKMPVQEIHLDNVLGGLELN 528
SGKV+AAA+EDMD L F +PVLLRHLTFSE RK P+ E +++ L GL+++
Sbjct: 170 SGKVYAAASEDMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMS 220
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 60.1 bits (139), Expect = 2e-10
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 202 LQKATEAGDQASIDKFNRRLVKVTRQHSEEAKELLKLMGIPVVDAP--CEAEAQCAALVK 375
LQKA + Q +DK RRL + + Q+ E E+LK++GIP +P EAEA +A+ +
Sbjct: 252 LQKAIKL-KQTELDKLERRLYRPSPQNIFEIFEILKILGIPASFSPIGVEAEAFASAISQ 310
Query: 376 SGKVFAAATEDMDALTFGSPVLLRHLTFSEARKMPVQ 486
+ +A AT+D D L GS ++ L ++ +P+Q
Sbjct: 311 NNLAYAVATQDTDVLLLGSSMISNFLDLNDNFHLPLQ 347
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 54.0 bits (124), Expect = 1e-08
Identities = 40/141 (28%), Positives = 62/141 (43%)
Frame = +1
Query: 22 AQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAHQLIXXXXXXXXXXXX 201
A ++ + ET +L ++ + L G+KP+ VFDG P KA
Sbjct: 43 AHELAFNKETDKYLKYAIHQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFEL 102
Query: 202 LQKATEAGDQASIDKFNRRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVKSG 381
+K + G ++ R V VT + + + L+ GI + AP EA+AQ L K
Sbjct: 103 GKKLWDEGKKSQAIMQFSRCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKEN 162
Query: 382 KVFAAATEDMDALTFGSPVLL 444
+ TED D L FG+ +L
Sbjct: 163 IIDGIITEDSDMLVFGAQTVL 183
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 51.6 bits (118), Expect = 7e-08
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +1
Query: 265 KVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDMDALTFGSPVLL 444
+VT+ +E +ELL+L G+P + AP EAEAQC+ L++ V T+D D FG +
Sbjct: 751 EVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVY 810
Query: 445 RHL 453
R++
Sbjct: 811 RNM 813
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +1
Query: 52 TSHLMGTFYRTIRLVENGIKPVYVFDGKPPDLK 150
+SH++G F R +L+ GIKPV+VFDG P LK
Sbjct: 52 SSHVVGFFRRICKLLFFGIKPVFVFDGGAPSLK 84
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.43
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 107 SNQCMCLMVNHQI*KPIS*LKELRDERKPKKNFRKLQKLVTKH 235
SN MC++ N + + L+ + +K KKN RK+ + + KH
Sbjct: 267 SNPIMCMVCNKNF-RSQNQLENHENSKKHKKNLRKMNQEIKKH 308
>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 27.9 bits (59), Expect = 0.99
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 280 HSEEAKELLKLMGIPVVDAPCE 345
H+E A +L KL G+P V A CE
Sbjct: 143 HTEAAVDLCKLAGLPPVGAICE 164
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 345 SGGAVRRIGEIWQGVCSSHRGYGRVDLWFSGFTTAFDLL 461
SG A + +G+IWQ + +RG+ L FSGF A L+
Sbjct: 40 SGLAPQVLGQIWQIADAENRGF----LTFSGFVIAMRLV 74
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +1
Query: 70 TFYRTIRLVENGIKPVYVFDGKP---PDLK 150
TF T+ + N KP Y+F+ KP PDL+
Sbjct: 247 TFCSTLSSLTNSEKPTYIFNFKPNSTPDLR 276
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = +1
Query: 253 RRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDMDALTFGS 432
RR + H + +LKL+ + P ++ V FA + ++MD+ TF
Sbjct: 791 RRDIVSREDHEDWDYIVLKLINAKMQGMPINSDPSIPPHVPPSSAFAYSNQEMDSATFKD 850
Query: 433 PVLLRHL 453
L L
Sbjct: 851 AYLYTRL 857
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 145 NLVVYHQTHTLV*CHSPPA*WFYRMYPSSVR*SHHQLILVGHLHSCLV 2
NL+ HQ H+ H+P + P S + +L GH H CL+
Sbjct: 217 NLLTVHQNHS---AHTPTS-----YLPESFIQDFYDFVLWGHEHECLI 256
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 16 EGAQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVF 126
EGA + SV+ T TF R I+L+ YVF
Sbjct: 355 EGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVF 391
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 388 FAAATEDMDALTFGSPVLLRHLTFSEARKMPVQEI 492
F ATE D L G P L HL F ++K P+ I
Sbjct: 47 FVVATEAHDNL--GCPHTLEHLCFMGSKKYPMNGI 79
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 28 LVSVDGETTSHLMGTFYRTIRLVENGIKPVYV 123
+ + DG + + TFY L + +KP+Y+
Sbjct: 3926 ITASDGSAVTTSLSTFYSASSLASSVVKPLYI 3957
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 143 SGGLPSNTYTGLMPFSTSL-MVL*NVPIKCEVVSPSTDT 30
+G + + Y+G PF+T+L VP EVV P T
Sbjct: 145 AGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGT 183
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 143 SGGLPSNTYTGLMPFSTSL-MVL*NVPIKCEVVSPSTDT 30
+G + + Y+G PF+T+L VP EVV P T
Sbjct: 217 AGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGT 255
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 143 SGGLPSNTYTGLMPFSTSL-MVL*NVPIKCEVVSPSTDT 30
+G + + Y+G PF+T+L VP EVV P T
Sbjct: 289 AGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGT 327
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 143 SGGLPSNTYTGLMPFSTSL-MVL*NVPIKCEVVSPSTDT 30
+G + + Y+G PF+T+L VP EVV P T
Sbjct: 361 AGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGT 399
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 143 SGGLPSNTYTGLMPFSTSL-MVL*NVPIKCEVVSPSTDT 30
+G + + Y+G PF+T+L VP EVV P T
Sbjct: 433 AGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGT 471
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 143 SGGLPSNTYTGLMPFSTSL-MVL*NVPIKCEVVSPSTDT 30
+G + + Y+G PF+T+L VP EVV P T
Sbjct: 505 AGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGT 543
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 143 SGGLPSNTYTGLMPFSTSL-MVL*NVPIKCEVVSPSTDT 30
+G + + Y+G PF+T+L VP EVV P T
Sbjct: 577 AGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGT 615
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 13 SEGAQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAH 156
SEG S TTS T R +EN K + D K D + H
Sbjct: 158 SEGEPESSTSATTTSVARRTRQRLAEHLENSKKTILQHDNKEEDKEIH 205
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 62 KCEVVSPSTDTSWAPSLL 9
KCE+V+ +D S PSLL
Sbjct: 577 KCEIVTHPSDVSQIPSLL 594
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 9.2
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 7 GRSEGAQ-LVSVDGETTSHLMGTFYRTIRLVENGIKPVYVF 126
G GAQ LVS DG+ + G Y ++L EN +K Y F
Sbjct: 55 GVESGAQPLVSDDGKLVLTVNGEIYNHLKLREN-LKGNYKF 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,581
Number of Sequences: 5004
Number of extensions: 37942
Number of successful extensions: 120
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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