Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M02
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 177 6e-45
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 93 1e-19
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908... 71 4e-13
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881... 52 3e-07
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 49 3e-06
08_01_0011 - 81673-81724,81826-82161,82426-82556,82629-82729,828... 44 1e-04
11_06_0145 - 20615044-20617167,20617444-20618076 32 0.33
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657 30 1.3
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 29 1.7
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019... 29 2.3
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503... 28 5.3
01_05_0153 + 18635495-18636952,18637262-18637333,18637448-186375... 28 5.3
07_01_0037 + 301864-302349 27 9.3
03_01_0147 - 1170481-1171260,1171332-1171511 27 9.3
01_06_0056 - 26037940-26039421 27 9.3
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 177 bits (430), Expect = 6e-45
Identities = 88/173 (50%), Positives = 114/173 (65%)
Frame = +1
Query: 7 GRSEGAQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAHQLIXXXXXXX 186
GR L + GE TSHL G RT+R++E GIKPV+VFDG+PPD+K +L
Sbjct: 47 GRKGTEVLTNEAGEVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRD 106
Query: 187 XXXXXLQKATEAGDQASIDKFNRRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAA 366
L +A E GD+ I+KF++R VKVT++H+E+ K LL LMG+PVV AP EAEAQCAA
Sbjct: 107 GSSEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAA 166
Query: 367 LVKSGKVFAAATEDMDALTFGSPVLLRHLTFSEARKMPVQEIHLDNVLGGLEL 525
L ++ KVFA A+EDMD+LTFG+ LRHLT ++ PV E + VL L L
Sbjct: 167 LCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGL 219
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 93.1 bits (221), Expect = 1e-19
Identities = 51/108 (47%), Positives = 70/108 (64%)
Frame = +1
Query: 202 LQKATEAGDQASIDKFNRRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVKSG 381
L +A E GD+ +I+KF++R VKVT+QH+EE K LL+LMG+PVV+
Sbjct: 24 LTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVE---------------- 67
Query: 382 KVFAAATEDMDALTFGSPVLLRHLTFSEARKMPVQEIHLDNVLGGLEL 525
V+A A+EDMD+LTFG+P LRHL ++K+PV E + VL LEL
Sbjct: 68 -VYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELEL 114
>09_05_0016 +
20089545-20089748,20090072-20090263,20090644-20090814,
20090915-20091096,20091189-20091435,20091776-20091908,
20092070-20092599,20092940-20093170
Length = 629
Score = 71.3 bits (167), Expect = 4e-13
Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Frame = +1
Query: 58 HLMGTFYRTIRLVEN-GIKPVYVFDGKPPDLKAHQLIXXXXXXXXXXXXLQKATEAGDQA 234
HL F+RT+ L G PV+V DG+P LK+ +TEA +A
Sbjct: 54 HLRTLFFRTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEA--EA 111
Query: 235 SIDKFNR-RLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDM 411
S D + R K TR + E+ ELL+ +G+PV+ A E EA CA L G V A T D
Sbjct: 112 SADALVQPRNAKFTR-YVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDS 170
Query: 412 DALTFGSPVLLRHLTFSEARKMPVQEIHLDNVLGGLEL 525
DA FG+ +++ L + K P + ++ ++ GL L
Sbjct: 171 DAFLFGAKTVIKVLRSN--CKEPFECYNMADIESGLGL 206
>01_06_0906 +
32886693-32886919,32887589-32887708,32887978-32888101,
32888224-32888361,32888492-32888701,32889085-32889232,
32890452-32890801,32890909-32890963,32891087-32891382,
32891480-32891531,32891740-32891947,32892064-32892446,
32894102-32894538,32895452-32895643
Length = 979
Score = 52.0 bits (119), Expect = 3e-07
Identities = 34/124 (27%), Positives = 57/124 (45%)
Frame = +1
Query: 58 HLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAHQLIXXXXXXXXXXXXLQKATEAGDQAS 237
H+ +R L +G+KP+ VFDG +K Q ++ AG+ +
Sbjct: 77 HIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGNSRA 136
Query: 238 IDKFNRRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDMDA 417
+ ++ V +T + + E ++LK + + AP EA+AQ L + V A TED D
Sbjct: 137 AFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITEDSDL 196
Query: 418 LTFG 429
+ FG
Sbjct: 197 IPFG 200
>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +1
Query: 244 KFNRRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDMDALT 423
K V+ + E +ELL++ G+P + AP EAEAQCA + + V T+D D
Sbjct: 844 KLESHAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFL 903
Query: 424 FGS 432
FG+
Sbjct: 904 FGA 906
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 55 SHLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAHQLIXXXXXXXXXXXXLQKATE 219
+HL+G R +L+ +PV+VFDG P LK L ++K E
Sbjct: 53 AHLLGFLRRICKLLFLRARPVFVFDGATPALKRRTLAARRRHRDAAQAKVRKTAE 107
>08_01_0011 -
81673-81724,81826-82161,82426-82556,82629-82729,
82849-82931,83154-83253,83366-83513,83664-83723,
84272-84345,84482-84554,84648-84699,84764-84897,
85096-85288,85386-85453
Length = 534
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 286 EEAKELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDMDALTFGSPVLLRHLTFSE 465
+EAK L +GIP +D EAEAQCA+L T D DA FG+ + R + E
Sbjct: 116 KEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDVFIGE 175
Query: 466 ARKMPVQEIH-LDNVLG 513
+ E+ ++ LG
Sbjct: 176 GGYVICYEMEDIEKTLG 192
>11_06_0145 - 20615044-20617167,20617444-20618076
Length = 918
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 423 GQRVHILGGCCKHLARFHQCGALRLRFTRR 334
G R H+L G C+HLA C R R R
Sbjct: 33 GARFHVLRGACEHLAHVRDCVRTRARVAAR 62
>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
Length = 922
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 408 ILGGCCKHLARFHQCGALRLRFTR 337
++GGC KHL + Q L LR+TR
Sbjct: 582 VMGGCLKHLRKLLQLRYLGLRYTR 605
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 420 QRVHILGGCC-KHLARFHQCGALRLRFTR 337
+R ++ GGCC KHL + L LR+TR
Sbjct: 581 ERCNVTGGCCLKHLGKLLHLRYLGLRYTR 609
>05_03_0418 +
13700855-13700942,13701602-13701728,13701845-13701916,
13702079-13702153,13702290-13702361,13702477-13702638,
13702726-13702800,13702880-13702951,13703040-13703108,
13703196-13703264,13703355-13703429,13703522-13703593,
13703668-13703737,13703920-13704361,13704442-13704573,
13704664-13704803,13704910-13705129,13705301-13705536,
13705732-13706256
Length = 930
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 134 LPSNTYTGLMPFSTSLMVL*NVPIKCEVVSPSTDTSWAPSLL 9
L +N +GLMP T + +L NV + PS SW SL+
Sbjct: 273 LSNNKLSGLMPNLTGMDMLENVDLSNNSFIPSEVPSWFTSLI 314
>04_04_1541 +
34249778-34249882,34249964-34250115,34250225-34250350,
34251868-34252030,34252601-34252678,34252749-34252847,
34253045-34253188,34253344-34253446,34255303-34255646,
34255727-34255891
Length = 492
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 256 RLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDMDALTFGSP 435
+ +++T H EEA +L + G + A A + AA + AAA E DA+ F P
Sbjct: 32 QFLQMTSWHLEEALQLFYIDGEAAL-AAHPAPSPAAAAEAAAAAVAAAAEVEDAMRFAPP 90
>01_05_0153 +
18635495-18636952,18637262-18637333,18637448-18637595,
18637690-18637871
Length = 619
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 25 QLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAH 156
+LVS GET L T + ++ N K +Y D K L H
Sbjct: 319 KLVSTTGETGEALRSTISKNSEIMSNIRKILYQHDNKNSSLSVH 362
>07_01_0037 + 301864-302349
Length = 161
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 318 NTSSGCAL*SGGAVRRIGEIWQGVCSSHRGYGRVDLWFSG 437
N GCA+ GG R G G+ + G G+ W G
Sbjct: 52 NAGGGCAIAGGGGCRGGGGCGMGMGMAASGGGKEGYWCGG 91
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 310 LMGIPVVDAP-CEAEAQCAALVKSGKVFAAATEDMDALTFG 429
L G V+DA EA C +V V A A D ALT G
Sbjct: 87 LRGFEVIDAAKARLEAACPGVVSCADVLAYAARDGVALTGG 127
>01_06_0056 - 26037940-26039421
Length = 493
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 298 ELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDMD 414
+L +L+G P AP +A C A V+ K+F ++ D
Sbjct: 284 QLHRLLGDPADQAPIDAVLDCVASVRP-KIFTVIEQEAD 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,447,572
Number of Sequences: 37544
Number of extensions: 285378
Number of successful extensions: 684
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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