Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M02
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell death-re...   210   4e-55
AC024791-9|AAF60653.1|  382|Caenorhabditis elegans Cell-death-re...   210   4e-55
AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical ...    48   3e-06
U13019-9|AAC24447.1|  434|Caenorhabditis elegans Hypothetical pr...    42   3e-04
Z93382-2|CAB07612.2|  639|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical ...    29   2.1  
AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical...    27   8.3  

>AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell
           death-related nuclease 1 protein.
          Length = 382

 Score =  210 bits (514), Expect = 4e-55
 Identities = 102/173 (58%), Positives = 124/173 (71%)
 Frame = +1

Query: 10  RSEGAQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAHQLIXXXXXXXX 189
           R +G+QL S DGETTSHLMG   RT+R+ ENG+KPVYVFDGKPPD+K  +L         
Sbjct: 47  RQDGSQLQSEDGETTSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAE 106

Query: 190 XXXXLQKATEAGDQASIDKFNRRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAAL 369
               L +A E GD    +KF RRLVKVT+Q ++EAK LL LMGIPVV+APCEAEAQCA L
Sbjct: 107 AEKALTEAKEKGDVKEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHL 166

Query: 370 VKSGKVFAAATEDMDALTFGSPVLLRHLTFSEARKMPVQEIHLDNVLGGLELN 528
           VK+GKVF   TEDMDALTFGS VLLRH     A+K+P++E +L   L  ++L+
Sbjct: 167 VKAGKVFGTVTEDMDALTFGSTVLLRHFLAPVAKKIPIKEFNLSLALEEMKLS 219


>AC024791-9|AAF60653.1|  382|Caenorhabditis elegans
           Cell-death-related nuclease protein1 protein.
          Length = 382

 Score =  210 bits (514), Expect = 4e-55
 Identities = 102/173 (58%), Positives = 124/173 (71%)
 Frame = +1

Query: 10  RSEGAQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAHQLIXXXXXXXX 189
           R +G+QL S DGETTSHLMG   RT+R+ ENG+KPVYVFDGKPPD+K  +L         
Sbjct: 47  RQDGSQLQSEDGETTSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAE 106

Query: 190 XXXXLQKATEAGDQASIDKFNRRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAAL 369
               L +A E GD    +KF RRLVKVT+Q ++EAK LL LMGIPVV+APCEAEAQCA L
Sbjct: 107 AEKALTEAKEKGDVKEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHL 166

Query: 370 VKSGKVFAAATEDMDALTFGSPVLLRHLTFSEARKMPVQEIHLDNVLGGLELN 528
           VK+GKVF   TEDMDALTFGS VLLRH     A+K+P++E +L   L  ++L+
Sbjct: 167 VKAGKVFGTVTEDMDALTFGSTVLLRHFLAPVAKKIPIKEFNLSLALEEMKLS 219


>AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical
           protein F57B10.6 protein.
          Length = 829

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/63 (38%), Positives = 38/63 (60%)
 Frame = +1

Query: 289 EAKELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDMDALTFGSPVLLRHLTFSEA 468
           + +E L   GIP +++P EAEAQC  L + G V    ++D D   FG+  + RH+ FS+ 
Sbjct: 480 DLQEFLTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHM-FSKN 538

Query: 469 RKM 477
           R++
Sbjct: 539 RRV 541



 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 22  AQLVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDG-KPPDLKAHQL 162
           AQL     +   HL     R  +L+   I+PV+VFDG + P LK   L
Sbjct: 38  AQLAYPSDQPFPHLRLLVNRLSKLLFYKIRPVFVFDGPQVPPLKRQVL 85


>U13019-9|AAC24447.1|  434|Caenorhabditis elegans Hypothetical
           protein T12A2.8 protein.
          Length = 434

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 41/131 (31%), Positives = 52/131 (39%)
 Frame = +1

Query: 55  SHLMGTFYRTIRLVENGIKPVYVFDGKPPDLKAHQLIXXXXXXXXXXXXLQKATEAGDQA 234
           S+L+  F R  RL+E  I P+ VFD       AH+               +K    GD  
Sbjct: 52  SYLVTFFTRIQRLLELKIIPIVVFDNINASSSAHE------SKDQNEFVPRKRRSFGDSP 105

Query: 235 SIDKFNRRLVKVTRQHSEEAKELLKLMGIPVVDAPCEAEAQCAALVKSGKVFAAATEDMD 414
             +     LV     H  +   LL  +GI V+ AP + EAQCA L   G      T D D
Sbjct: 106 FTN-----LV----DHVYKTNALLTELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFD 156

Query: 415 ALTFGSPVLLR 447
              FG   L R
Sbjct: 157 YFLFGGKNLYR 167


>Z93382-2|CAB07612.2|  639|Caenorhabditis elegans Hypothetical
           protein F45G2.3 protein.
          Length = 639

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 2/135 (1%)
 Frame = +1

Query: 43  GETTSHLMGTFYRTIR-LVENGIKPVYVFDGKPPDLKAHQLIXXXXXXXXXXXXLQKATE 219
           GE T   +    + ++ L+  G   V VFDG+P   K                  +    
Sbjct: 49  GEETQSYVNYVNKYVKELLGMGCHVVMVFDGRPLPAKKGTNEERRELREKRKEHAEMLLA 108

Query: 220 AGDQASIDKFNRRLVKVTRQHSEEAKELLKLM-GIPVVDAPCEAEAQCAALVKSGKVFAA 396
            G +       R    ++    E   +  + M  + +V AP EA+AQ A LV+   V A 
Sbjct: 109 KGLEREARDTYRLATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAV 168

Query: 397 ATEDMDALTFGSPVL 441
            TED D + FG  ++
Sbjct: 169 ITEDSDLIVFGCEMI 183


>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 73  FYRTIRLVENGIKPVYVFDGKPPDLKAHQ 159
           F+ + +L ENGIKP  ++   PP  K  Q
Sbjct: 366 FFNSKKLEENGIKPAVIYGDLPPGTKLAQ 394


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 73  FYRTIRLVENGIKPVYVFDGKPPDLKAHQ 159
           F+ + +L ENGIKP  ++   PP  K  Q
Sbjct: 368 FFNSKKLEENGIKPAVIYGDLPPGTKLAQ 396


>AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical
           protein T06A1.1 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 393 CKHLARFHQCGALRLRFTRRIHYWYSH*FKQFLGFFTMLPRNFNQTTV 250
           C H +RFH    + +    R+ Y   +    F+ FF  +P NF++ ++
Sbjct: 211 CHHRSRFHSKWVINMDIDERVIYTGPN---NFIHFFRSIPSNFSEISL 255


>AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical
           protein Y18H1A.15 protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 22/73 (30%), Positives = 28/73 (38%)
 Frame = +1

Query: 91  LVENGIKPVYVFDGKPPDLKAHQLIXXXXXXXXXXXXLQKATEAGDQASIDKFNRRLVKV 270
           LVE G  PV      P  ++   L             L K  EAG +  ++   RR VK+
Sbjct: 455 LVEGGGNPV------PEAIRGSHLFKPTRKFNESVEKLMKIAEAGTERYVETACRRGVKM 508

Query: 271 TRQHSEEAKELLK 309
                  AKEL K
Sbjct: 509 VDDLENRAKELKK 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,801,904
Number of Sequences: 27780
Number of extensions: 227811
Number of successful extensions: 489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)