Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M02
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 387 HLARFHQCGALRLRFTRR 334
           HL +F QC +L+L F  R
Sbjct: 38  HLDKFLQCASLKLAFEPR 55


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 242 TSLTVVWLKLRGSIVKKPRNCLN 310
           T +T  WLK    +  KP++  N
Sbjct: 198 TDMTAQWLKENSRLALKPKDVSN 220


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 307 KLMGIPVVDAPCEAEAQCAALVKSGKVFAAATE 405
           K M +  +  PC   A+C A +    +  AA E
Sbjct: 468 KYMAVSGLPEPCRCHARCIARLALDMMDLAADE 500


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 307 KLMGIPVVDAPCEAEAQCAALVKSGKVFAAATE 405
           K M +  +  PC   A+C A +    +  AA E
Sbjct: 468 KYMAVSGLPEPCRCHARCIARLALDMMDLAADE 500


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 430 NQRSTRPYPR 401
           NQ STR YPR
Sbjct: 696 NQTSTREYPR 705


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/44 (22%), Positives = 14/44 (31%)
 Frame = -3

Query: 449  CRSKTGEPKXXXXXXXXXXXNTLPDFTNAAHCASASQGASTTGI 318
            C SK GEP             + P     A  A +   + T  +
Sbjct: 895  CSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSL 938


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,509
Number of Sequences: 438
Number of extensions: 2651
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)