Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_M01
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   2.6  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   4.5  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   4.5  

>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 423 ILQIYSYQINHNNCITDNYILI-DNLYCPSRRNLSHYQIYSCIYPSPPGG 277
           +LQ YS   + N+C T  YIL+   L    +  +   QI + I  +PP G
Sbjct: 125 LLQDYSSWTHGNSCKTSIYILLFFALSNTEKTRVRSLQILANILKNPPAG 174


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 290 PLQAEKVSPARSGHLHTTITLGNGRSMP 207
           P    K +PA+S + H+T+T    +S P
Sbjct: 36  PPSVNKSNPAKSNYYHSTVTDDISKSQP 63


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 88  SLTHVTTMVVCCARPAGRNSGLVGQDCTLPYWQ 186
           S+  +  +V+ CA+ A +NS ++  + T  YW+
Sbjct: 103 SVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWR 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,818
Number of Sequences: 5004
Number of extensions: 46368
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)