Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M01
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202 32 0.28
08_01_0925 + 9117217-9117576,9117674-9117749,9118460-9118592,911... 31 0.64
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 30 1.1
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 29 1.5
08_02_0470 - 17551368-17552330,17552420-17552920 29 2.0
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 29 2.6
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348... 29 2.6
07_03_0804 - 21639016-21639231,21639379-21639555,21640120-216405... 28 3.4
03_04_0171 + 18001993-18001995,18002527-18002640,18002958-180031... 28 3.4
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657... 28 4.5
06_03_1110 - 27676172-27676522,27676608-27676703,27676845-276769... 27 6.0
02_05_0570 + 30070338-30071606 27 6.0
02_05_0039 + 25335690-25335883,25335984-25336131,25337292-253373... 27 6.0
02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817... 27 6.0
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008 27 6.0
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 27 6.0
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 24 6.4
11_01_0055 + 421459-421620,422356-422697,422934-423051,423132-42... 27 7.9
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 27 7.9
>04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202
Length = 234
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = -3
Query: 423 ILQIYSYQINHNNCITDNYILIDNLYCPSRRNLSHYQIYSCIYP---SPPGGEGLPGQIR 253
++ + + I HN +T N + N+ C R S Y C++ P G +
Sbjct: 36 LVMVSAIYILHNRKMTKNAFALSNMLCEGTRTGSDRNTYECVHSLSRHPTPGAAREAKTL 95
Query: 252 PPP 244
PPP
Sbjct: 96 PPP 98
>08_01_0925 +
9117217-9117576,9117674-9117749,9118460-9118592,
9118684-9118795,9119121-9119180,9119425-9119516,
9119628-9119697,9119776-9119880
Length = 335
Score = 30.7 bits (66), Expect = 0.64
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -3
Query: 297 YPSPPGGE--GLPGQIR-PPPHNHYTG*W--KVYATAPSPLGLPIRQSTV 163
+P PP G PG I PPP+NHY V T+PSP+ P + V
Sbjct: 177 HPPPPAVSMWGTPGYIAAPPPYNHYAAYSVPPVAMTSPSPVPGPTAYAPV 226
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 297 YPSPPGGEGLPGQIRPPPHNHYTG*WKVYATAPS--PLGLPIRQ 172
Y PPGG+ PG +P Y+ + Y P P G P +Q
Sbjct: 767 YGVPPGGDSRPGYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQ 810
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -3
Query: 321 HYQIYSCIYPSPPGGEGLPGQIRPPPHNHYTG*WKVYATAPSPLGLPIRQSTVLP 157
+Y Y YP PP +PG + P +H+ G P P PI + P
Sbjct: 65 YYPQYGNFYPPPP--PSMPGPLPAPYDHHHRGGGPAQPPPPPPPPQPIHAAGEFP 117
>08_02_0470 - 17551368-17552330,17552420-17552920
Length = 487
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 79 SPLSLTHVTTMVVCCARPAGRNSGLVGQDCTLPY 180
SPL H+ ++ CC A S +DC L Y
Sbjct: 238 SPLRHDHIVRLLGCCVAAATTTSSAEDEDCLLVY 271
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 342 PSRRNLSHYQIYSCIYPSPP--GGEGLPGQIRPPPH-NHYTG*WKVYATAPSP 193
P +N+ + Q Y PP GG G + PPPH +H+ G + Y P
Sbjct: 364 PPPQNMPYSQPYGGYPQQPPPRGGMGWDQRQGPPPHASHHGGGYDYYKQGSQP 416
>07_01_0460 +
3486040-3486758,3486804-3486876,3487067-3487132,
3488090-3488251,3488427-3488457,3488767-3489206
Length = 496
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 232 HWVMEGLCHRPFTPWFANTAKYSLALLGLN 143
HW ME H P + W+ NT+ LA GL+
Sbjct: 175 HW-MELTLHLPSSDWYRNTSANDLAYWGLD 203
>07_03_0804 -
21639016-21639231,21639379-21639555,21640120-21640588,
21640608-21641218
Length = 490
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 211 IDLPLPSVMVVWRWPDLAGETFSAWRGRIYTRI 309
+D+ ++ W WP++ G+ SAW G R+
Sbjct: 102 VDIADLAITYHWDWPEVDGDRASAWAGFAARRV 134
>03_04_0171 +
18001993-18001995,18002527-18002640,18002958-18003127,
18003408-18003684
Length = 187
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 226 PSVMVVWRWPDLAGETFSA 282
PS M VW+WP AG SA
Sbjct: 88 PSAMGVWQWPVAAGSRLSA 106
>02_05_1213 -
34963971-34964658,34965030-34965270,34965347-34965736,
34966515-34966781,34966881-34967249,34967931-34968014,
34968113-34968226,34969952-34970018
Length = 739
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 294 PSPPGGEGLPGQIRPPPHNHYTG*WKVYATAPSPL 190
P E G + PP H H+ + ++ +PSPL
Sbjct: 52 PRAMSPESTGGPVHPPSHKHHRRPYHPHSPSPSPL 86
>06_03_1110 -
27676172-27676522,27676608-27676703,27676845-27676976,
27677518-27677622,27677946-27678119,27678361-27678430,
27678515-27678696,27678974-27679083,27679360-27679464,
27679570-27679648,27679808-27679848,27679931-27680009,
27680364-27680492
Length = 550
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 250 TSTQPLHWVMEGLCHRPFTPWFANTAKYSLALL 152
T T +VM+G TPW N SLA+L
Sbjct: 348 TGTYAGQYVMQGFLDLRMTPWIRNLLTRSLAIL 380
>02_05_0570 + 30070338-30071606
Length = 422
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 159 ARLYFAVLANQGVKGRWHRPSITQCNGC 242
A L A LA GV G W RP +T GC
Sbjct: 337 AALAGAGLAESGVSG-WRRPFVTHFTGC 363
>02_05_0039 +
25335690-25335883,25335984-25336131,25337292-25337349,
25337652-25338116,25338435-25338575,25338694-25339934
Length = 748
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 49 KVCEFGCSG*SPLSLTHVTTMV 114
KV +FG S PL THV TMV
Sbjct: 551 KVSDFGASRSIPLDQTHVVTMV 572
>02_02_0239 -
8177152-8177445,8177821-8178207,8178717-8179715,
8179799-8179953,8180725-8180812,8180901-8181004,
8181327-8181549,8182251-8182335,8182425-8182816,
8182852-8183097
Length = 990
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 459 LPAVLVPKHHFFILQIYSYQINHNNCITDNYILIDNLYCPSRRNLSHY-QIYSCIYPSPP 283
L ++ +F ++ ++++ C + I D+L+C SR+ HY + + I P+ P
Sbjct: 331 LARMMAANLYFSQIEDLMFELSMWRCSDELRIRADDLHCSSRKAAKHYIEFWKQIPPNEP 390
>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
Length = 460
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 247 STQPLHWVMEGLCHRPFTPW 188
S P+HW H P TPW
Sbjct: 55 SVDPIHWPKMETSHEPQTPW 74
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 249 PPHNHYTG*WKVYATAPSPLGLPIRQSTVLPY 154
P H TG W+ T P GL IRQ + Y
Sbjct: 680 PYHKFSTGSWETLETKPKERGLDIRQELLKFY 711
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 24.2 bits (50), Expect(2) = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 264 GQIRPPPHNH 235
GQ+ PPPH+H
Sbjct: 775 GQVPPPPHHH 784
Score = 21.4 bits (43), Expect(2) = 6.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 255 RPPPHNHYTG*WK 217
RPPP +H+ WK
Sbjct: 825 RPPPCHHHDRPWK 837
>11_01_0055 +
421459-421620,422356-422697,422934-423051,423132-423355,
423711-424127
Length = 420
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 303 CIY--PSPPGGEGLPGQIRPPPHNHYTG 226
C++ PSP E PG +PP +TG
Sbjct: 333 CLFLKPSPSSSESTPGDAKPPQAVSFTG 360
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 303 CIYPSPPGGEGLPGQIRPPP 244
C+YP PP LP + P P
Sbjct: 56 CVYPPPPTKPALPAPLPPTP 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,290,982
Number of Sequences: 37544
Number of extensions: 378122
Number of successful extensions: 1186
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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