Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_M01
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 30 0.77
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 30 0.77
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 1.8
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 1.8
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 29 2.3
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 3.1
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 28 3.1
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 28 4.1
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 23 5.0
Z92809-3|CAB07269.1| 440|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81537-1|CAB04372.1| 326|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 7.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 7.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 7.1
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 7.1
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 7.1
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 24 8.4
Z69794-4|CAA93678.3| 654|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 9.4
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 9.4
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 9.4
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 27 9.4
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 27 9.4
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 27 9.4
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 27 9.4
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical
protein W03B1.9 protein.
Length = 633
Score = 30.3 bits (65), Expect = 0.77
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 324 SHYQIYSCIYPSPPGGEGLPGQIRPPP 244
+ +Q++ + P+PP GL G++ PPP
Sbjct: 422 NEFQVFDRVLPAPPLQVGLVGRVPPPP 448
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical
protein W03B1.5 protein.
Length = 581
Score = 30.3 bits (65), Expect = 0.77
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 324 SHYQIYSCIYPSPPGGEGLPGQIRPPP 244
+ +Q++ + P+PP GL G++ PPP
Sbjct: 370 NEFQVFDRVLPAPPLQVGLVGRVPPPP 396
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -3
Query: 300 IYPSPPGGEGLPGQIRPPPHNHYTG*WKVYATAPSPLGLP 181
+ P PPG GLPG PP G YA P G P
Sbjct: 235 VIPGPPGDSGLPGPWGPPGSAGMPG-EDGYAGTPGEKGWP 273
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -3
Query: 300 IYPSPPGGEGLPGQIRPPPHNHYTG*WKVYATAPSPLGLP 181
+ P PPG GLPG PP G YA P G P
Sbjct: 235 VIPGPPGDSGLPGPWGPPGSAGMPG-EDGYAGTPGEKGWP 273
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 288 PPGGEGLPGQIRPPPHNHY 232
PPG G+P PPPH+ Y
Sbjct: 65 PPGPHGMPFMGGPPPHHQY 83
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 294 PSPPGGEGLPGQIRPP 247
P PPGG G PG PP
Sbjct: 411 PPPPGGPGAPGSYGPP 426
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -3
Query: 297 YPSPPGG-EGLPGQIRPPPHNH 235
YP PP G G PG PPPH +
Sbjct: 198 YPYPPQGMPGYPGGPPPPPHGY 219
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 288 PPGGEGLPGQIRPP 247
PPGG G+PG RPP
Sbjct: 584 PPGGGGIPGVDRPP 597
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 23.4 bits (48), Expect(2) = 5.0
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 288 PPGGEGLPGQ 259
PPG +GLPGQ
Sbjct: 144 PPGQDGLPGQ 153
Score = 22.6 bits (46), Expect(2) = 5.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 285 PGGEGLPGQIRPPPHNHYTG 226
PG +G PG PP + TG
Sbjct: 187 PGQDGQPGLAGPPGRDGLTG 206
>Z92809-3|CAB07269.1| 440|Caenorhabditis elegans Hypothetical
protein R17.3 protein.
Length = 440
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +3
Query: 111 GSVLCTACRPQFRPSRARLYFAVLANQGVKGRWHRPSITQCNG 239
GSV+C C+P+ R A G +G W CNG
Sbjct: 372 GSVMCAECQPEATYHRNNGRCASDLEDGDQGFWKLIGPQSCNG 414
>Z81537-1|CAB04372.1| 326|Caenorhabditis elegans Hypothetical
protein F41D3.1 protein.
Length = 326
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 75 VISPITDPRHHNGSVLCTACRPQFRPSRARLY 170
V S + R H G + CTAC FR S + Y
Sbjct: 13 VCSSMDRTRRHFGIIACTACAAFFRRSFGQQY 44
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 263 PGRPSPPGGDGY 298
PG P PPG DGY
Sbjct: 377 PGNPGPPGTDGY 388
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 263 PGRPSPPGGDGY 298
PG P PPG DGY
Sbjct: 376 PGNPGPPGTDGY 387
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 263 PGRPSPPGGDGY 298
PG P PPG DGY
Sbjct: 376 PGNPGPPGTDGY 387
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 263 PGRPSPPGGDGY 298
PG P PPG DGY
Sbjct: 377 PGNPGPPGTDGY 388
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 263 PGRPSPPGGDGY 298
PG P PPG DGY
Sbjct: 413 PGNPGPPGTDGY 424
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 24.2 bits (50), Expect(2) = 8.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 294 PSPPGGEGLPGQ 259
P PPG EG PG+
Sbjct: 176 PGPPGPEGAPGE 187
Score = 21.0 bits (42), Expect(2) = 8.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -3
Query: 285 PGGEGLPGQIRPPP 244
PG G PGQ+ P
Sbjct: 218 PGNPGAPGQVTETP 231
>Z69794-4|CAA93678.3| 654|Caenorhabditis elegans Hypothetical
protein R03G8.3 protein.
Length = 654
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 230 LGNGRSMPPPLHPLVCQYGKVQSCPTRPELRPAGRA 123
L N R+MP P+ +CQ+ K Q + G A
Sbjct: 509 LRNCRNMPIPMQYCICQFNKTQVSTKSETAKGVGEA 544
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 294 PSPPGGEGLPGQIRPPPHNHYTG 226
P PG +G PG + PP + Y G
Sbjct: 987 PGLPGRDGQPGPVGPPGDDGYPG 1009
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 294 PSPPGGEGLPGQIRPPPHNHYTG 226
P PG +G PG + PP + Y G
Sbjct: 1244 PGLPGRDGQPGPVGPPGDDGYPG 1266
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 294 PSPPGGEGLPGQIRPPPHNHYTG 226
P PG +G PG + PP + Y G
Sbjct: 1243 PGLPGRDGQPGPVGPPGDDGYPG 1265
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 294 PSPPGGEGLPGQIRPP 247
P PPG +G PG+ PP
Sbjct: 239 PGPPGKDGQPGKAGPP 254
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 324 SHYQIYSCIYPSPPGGEGLPGQIRPP 247
++ Q C P PPG G+PG+ P
Sbjct: 96 ANLQCEGCCLPGPPGPAGVPGKPGKP 121
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 99 RHHNGSVLCTACRPQFRPSRARLYFAVLANQ 191
R H G + CTAC FR S Y N+
Sbjct: 21 RRHFGIISCTACAAFFRRSIGMQYLCTAENR 51
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 263 PGRPSPPGGDGYIHEYI 313
PG P PPG D +H+ I
Sbjct: 116 PGEPGPPGPDAELHDRI 132
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 324 SHYQIYSCIYPSPPGGEGLPGQIRPP 247
++ Q C P PPG G+PG+ P
Sbjct: 96 ANLQCEGCCLPGPPGPAGVPGKPGKP 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,654,173
Number of Sequences: 27780
Number of extensions: 293084
Number of successful extensions: 1623
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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