Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L24
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.0  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    27   2.6  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    27   2.6  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   4.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   6.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.0  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.0  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 115 AANVATFHHELHWIAAYVI 59
           A    +FHH LHW+  Y++
Sbjct: 701 ALQPVSFHHPLHWLLVYLL 719


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 331 NVTISFGYSGAGSFNNSNSTSDKGNPGVYRS 423
           N+TI  GY+ A  +  SN    +  PG YRS
Sbjct: 58  NITIKLGYANAKIYKCSNEECPR--PGCYRS 86


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 318 RGYLERYDIIWVQWRWEL 371
           R +L RY +  VQW WEL
Sbjct: 274 RPHLFRYQVTCVQWLWEL 291


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 244 HVRDAADEEHRPKESQQIDK--MQVDGAVRII 155
           HVR+  DEEHR  E + +++   Q+   VR++
Sbjct: 563 HVRNTLDEEHRVVERKLLEREEQQIYRRVRVL 594


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 50  YTKDYVSCDPMEFMMKCRDVSGGACNTATCHFTGLD 157
           +T+D +S +P  F+      S G+CNT+ C++   D
Sbjct: 688 FTQDVLSLNP-HFLF-----SNGSCNTSLCYYESTD 717


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 570  LVQKLWPCTAHMMYA 526
            LVQK+ PC+A  MYA
Sbjct: 4507 LVQKILPCSAGQMYA 4521


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 318 DVSVKNGRSRLWNVQYQVENVLASIMSETPLMKNIVQKNPSKLT 187
           +V  ++ +  +W  QY  EN   + ++ +PL  N      S LT
Sbjct: 235 EVDSEDWKDLVWKSQYATENANTNSINNSPLSSNTTGVPNSVLT 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,121
Number of Sequences: 5004
Number of extensions: 43793
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)