Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_L24
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 55 4e-08
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 52 3e-07
08_02_0544 + 18445810-18445995,18446894-18447053,18448186-184483... 31 0.49
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393... 31 0.86
08_02_0534 + 18285477-18285689,18286189-18286348,18287924-182881... 30 1.1
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124... 30 1.5
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 28 4.6
06_03_1220 - 28505306-28508497 28 6.1
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 8.0
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 27 8.0
06_01_1080 + 8836289-8836347,8836525-8836783,8836911-8837444,883... 27 8.0
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654... 27 8.0
02_01_0383 + 2776526-2776632,2777579-2777835,2777915-2778366,277... 27 8.0
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 55.2 bits (127), Expect = 4e-08
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 6/179 (3%)
Frame = +2
Query: 44 GVYTKDYVSCDPMEFMMKCRDVSGGACNTATCHFTGLDNPHSTVYLHLVNLLGFFWTMFF 223
G ++ + D + +K V+ C + H+T PH + + L +L G +W F
Sbjct: 407 GQVLRNDCNTDCCSYDLKLGKVNCDNCCGYSIHYT----PHIGIAI-LFHLFGCYWATQF 461
Query: 224 ISGVSDMMLASTFSTWYWTFHK--RDLPFFTLTSGIFRTLRYHXXXXXXXXXXXXXXXXX 397
S ++A + +++YW + D+PF T+ S + R LRY
Sbjct: 462 FIACSSTVIAGSVASYYWARGEISHDIPFVTVVSSLKRLLRYSLGSVAIGSLVVSAVEWV 521
Query: 398 XXXXEYIDHKIKKFDNP----LTRXXXXXXXXXXXXXENFLKFIHKNAYIMCAVHGHNF 562
E + K+K FD+ + + LK +++NAYIM A+ G F
Sbjct: 522 RFILECLRRKLKLFDSARESCFGKMTSSSSQCCLGCIDWTLKSVNRNAYIMIAITGKGF 580
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 52.0 bits (119), Expect = 3e-07
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 6/179 (3%)
Frame = +2
Query: 44 GVYTKDYVSCDPMEFMMKCRDVSGGACNTATCHFTGLDNPHSTVYLHLVNLLGFFWTMFF 223
G ++ + D + +K V+ C + H+T PH + + L +L G +W F
Sbjct: 407 GQVLRNDCNTDCCSYDLKLGKVNCDNCCGYSIHYT----PHIGIAI-LFHLFGCYWATQF 461
Query: 224 ISGVSDMMLASTFSTWYWTFHK--RDLPFFTLTSGIFRTLRYHXXXXXXXXXXXXXXXXX 397
S ++A + +++YW + D+PF T+ S + R LRY
Sbjct: 462 FIACSSTVIAGSVASYYWARGEISHDIPFVTVVSSMKRLLRYSLGSVAIGSLVVSAVEWV 521
Query: 398 XXXXEYIDHKIKKFDNP----LTRXXXXXXXXXXXXXENFLKFIHKNAYIMCAVHGHNF 562
E + K+K D+ + + LK +++NAYIM A+ G F
Sbjct: 522 RFILECLRRKLKLVDSARESCFGKMTSSSSQCCLGCIDWTLKSVNRNAYIMIAITGKGF 580
>08_02_0544 +
18445810-18445995,18446894-18447053,18448186-18448386,
18448474-18448538,18448697-18448761,18448784-18448874,
18448965-18449051,18449204-18449254,18449604-18449825,
18449987-18450080,18450159-18450299,18450391-18450476
Length = 482
Score = 31.5 bits (68), Expect = 0.49
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 173 VYLHLVNLLGFFWTMFFISGVSDMMLASTFSTWYWTFHKRDLP 301
VY LL F W F + V+ + T STWYW + +P
Sbjct: 263 VYWKEFGLLAFVWIAFLVLQVTKNYMP-TCSTWYWVLNFLQIP 304
>08_02_0501 +
17836948-17837373,17837857-17839184,17839270-17839380,
17839719-17839998,17840275-17840396,17840451-17840556,
17840814-17841020,17841130-17841255,17841719-17841817,
17842265-17842456,17842555-17843073
Length = 1171
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 355 SGAGSFNNSNSTSDKGNPGVY 417
SGAGS ++S+S+SD+G GVY
Sbjct: 46 SGAGSSSSSSSSSDEGGGGVY 66
>08_02_0534 +
18285477-18285689,18286189-18286348,18287924-18288124,
18288216-18288280,18288465-18288492,18288568-18288629,
18288885-18288971,18289310-18289360,18289663-18289884,
18291148-18291241,18291349-18291489,18291587-18291672
Length = 469
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 173 VYLHLVNLLGFFWTMFFISGVSDMMLASTFSTWYWTFHKRDLP 301
VY LL F W F V+ + T STWYW + +P
Sbjct: 250 VYWKEFGLLAFVWIAFLALQVTKNYMP-TCSTWYWVLNLLQIP 291
>09_02_0565 +
10710770-10711003,10711368-10711527,10712277-10712477,
10712564-10712628,10712740-10712767,10712847-10712923,
10713023-10713109,10713572-10713622,10713857-10713937,
10714125-10714346,10714424-10714517,10714608-10714748,
10716383-10716444,10716519-10717106
Length = 696
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 173 VYLHLVNLLGFFWTMFFISGVSDMMLASTFSTWYWTFHKRDLPF 304
+Y LL F W F + V+ A T S+WYW + L F
Sbjct: 262 IYWKEFGLLAFVWMAFLVLQVTKNYTA-TCSSWYWILNLLQLMF 304
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 333 VLNIPDVSVKNGRSRLWNVQYQVENVLASIMSETPLMKNIVQKNPSKLTRC 181
V I VS G + L + QY E + P + I+ NPS + RC
Sbjct: 258 VKGIIQVSRSLGDAYLKHSQYNTEQIKPKFRLPEPFSRPILSANPSIIARC 308
>06_03_1220 - 28505306-28508497
Length = 1063
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +2
Query: 44 GVYTKDYVSCDPMEFMMKCRDVSGGACNTATCHFTGLDNPHSTVYLHLVNLLGFFWTMFF 223
G +C M+ + R+V GG + + L+ S + VN+ G FW +
Sbjct: 357 GTIPPSIYTCTAMKALRVSRNVMGGQVSPEIGNLKELEL-FSLTFNSFVNISGMFWNLKS 415
Query: 224 ISGVSDMMLASTF 262
+ ++ ++L+ F
Sbjct: 416 CTNLTALLLSYNF 428
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 62 YVSCDPMEFMMKCRDVSGGACN-TATCHFTGLDNPHSTVYLHLVNLLGFFW 211
+V CD EF++K D + + T T LDN H T + +++ FW
Sbjct: 92 FVKCDHFEFLLKGNDHTDCTVSLTGTTASVRLDNLHLTAF--GIHVASAFW 140
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 541 AHDVRVLMYELEKVLQT 491
AHDVR+L Y+LE V+ T
Sbjct: 68 AHDVRMLSYDLEDVVDT 84
>06_01_1080 +
8836289-8836347,8836525-8836783,8836911-8837444,
8837527-8837636,8843938-8844129,8845062-8845203
Length = 431
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 267 PGIGHSINETCHSLHSRRGYLE--RYDIIWVQWRW 365
P + N+TC +H ++ + D+ +VQWRW
Sbjct: 27 PDAPYYTNDTCSFIHEHYDCMKYGKLDLGFVQWRW 61
>03_02_0222 +
6540095-6540099,6541215-6541339,6541440-6541766,
6541815-6543215,6543268-6543357,6543800-6544515,
6545549-6545707,6545877-6546186,6546794-6546861,
6547354-6547896
Length = 1247
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 37 LSGSVHKGLRKLRSNGVHDE 96
LSG+VH+ L+KLR+ G D+
Sbjct: 534 LSGTVHEALQKLRAAGAFDK 553
>02_01_0383 +
2776526-2776632,2777579-2777835,2777915-2778366,
2778845-2779102
Length = 357
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 65 VSCDPMEFMMKCRDVSGGACNTATCHFTGLDNPHSTVYLH 184
+ D + K S G TA CHF + P S+ +LH
Sbjct: 195 IDLDSLSNTEKLYRTSAGETVTADCHFVCIGKPLSSSWLH 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,176
Number of Sequences: 37544
Number of extensions: 298909
Number of successful extensions: 876
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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