Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L24
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.93 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   1.2  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   1.2  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   1.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   8.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 17  LQNSTCDCQGVYTKDYVSCDPMEFMMKCR 103
           ++N T DC  VY+    +C  + F++K R
Sbjct: 215 VKNYTADCTQVYSTGNFTCLEVVFVLKRR 243


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 133 GSITCSAANVATFHHELHWIAAYVILCV 50
           GS+ CS      FH E H    +   CV
Sbjct: 163 GSVVCSLPQTIVFHLETHPNVTWYSQCV 190


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 460 APCEGVIELFNFVIDILQD 404
           A C GVI   N VID L D
Sbjct: 84  AHCAGVITALNNVIDFLHD 102


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 460 APCEGVIELFNFVIDILQD 404
           A C GVI   N VID L D
Sbjct: 84  AHCAGVITALNNVIDFLHD 102


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 135 RVISQDSIIRTAPSTCILSICWDSF 209
           R I    I   APST ++ + W SF
Sbjct: 197 RQIGHHLIQTFAPSTLVVMLSWFSF 221


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 372 KAPSATVPK*YRNV-LNIPDVSVKNGRSRLWNVQ 274
           K  +   P  Y ++ L+ PD+SV++G   + N+Q
Sbjct: 713 KKAAGDTPGDYTDLKLSNPDISVEDGTLSINNIQ 746


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 264 ENVLASIMSETPLMKNIVQK 205
           E VLA  ++E P  +N VQK
Sbjct: 68  EVVLAKTIAECPESENTVQK 87


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 498 SKHQKKHLQQHRMH 457
           S+ Q++HLQ H  H
Sbjct: 188 SQAQQQHLQAHEQH 201


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -3

Query: 567 VQKLWPCTAHMMYAFLCMNLRKFSKHQKKHLQQHRMHRV 451
           +QK+WP   + M      N +  +  Q K   +  M+++
Sbjct: 147 MQKIWPFKEYQMNGNNITNFKNSNIFQLKQHMRDTMNKI 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,596
Number of Sequences: 438
Number of extensions: 2954
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)