Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L22
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             158   4e-41
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.39 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.3  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  158 bits (383), Expect = 4e-41
 Identities = 74/75 (98%), Positives = 75/75 (100%)
 Frame = +1

Query: 10  KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 189
           KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGG
Sbjct: 59  KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGG 118

Query: 190 SILASLSTFQQMWIS 234
           SILASLSTFQQMWIS
Sbjct: 119 SILASLSTFQQMWIS 133


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 104 RKSQPSLHPR*RSKSSRHQ 160
           ++SQP +HPR + ++ +HQ
Sbjct: 215 QQSQPGMHPRQQQQAQQHQ 233


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 22  DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWI 183
           DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +WI
Sbjct: 349 DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--IWI 398


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 414 NSDGGSERGAAGAPLPPSS 470
           N++  S+ GAA +  PP+S
Sbjct: 258 NNEDSSDSGAAASDRPPAS 276


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +3

Query: 60  WWYHHVPWYC 89
           WW H + W C
Sbjct: 526 WWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +3

Query: 60  WWYHHVPWYC 89
           WW H + W C
Sbjct: 579 WWSHVLGWLC 588


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 423 GGSERGAAGAPLPP 464
           GG    +AGAP+PP
Sbjct: 406 GGQLPPSAGAPMPP 419


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 214 FQQMWISKQEYDESGPSIVHRK 279
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,790
Number of Sequences: 438
Number of extensions: 2911
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)