Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L21
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    26   2.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   4.5  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   5.9  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   5.9  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   7.8  

>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +3

Query: 306 KSQSEIKSTDYVD-CIEEKQAPLADINEESSDNIYAI---IEES--PIRHSKPLPGVPS 464
           +S   I S D  D C   KQ+P+ ++    SDN       +E S  PI+  KPLP +P+
Sbjct: 361 RSIRRIVSDDPRDYCSPIKQSPIQNLKFLDSDNSLLSSQNVEASSQPIKIRKPLPEIPN 419


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 233 NGRPTDCTTSAITKPT*RRASDIHKITERNKIHRLRRLHRGETSTLS 373
           NG P D           +R+S   + T R     +R +HRG+TSTLS
Sbjct: 291 NGSPEDSPLLVSPNHFLQRSS---RTTIRRTGASIRTIHRGKTSTLS 334


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 135 NRAQSMRAPVAQKPVLQSFGSMRQAPVTPRPVSM 236
           N++ S+     QKP L  FG  R   V+  P +M
Sbjct: 165 NKSLSIEIMSPQKPPLSPFGGSRDRLVSETPTNM 198


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 288 GQVIFTKSQSEIKSTDYVDCI--EEKQAPLADINEESSDNIYAIIEESPIRHSKPLPGVP 461
           G+  FT +  E      V+    E+ +  L  +N E        + E P   ++PLP VP
Sbjct: 122 GEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLREDPDAANEPLPEVP 181

Query: 462 S 464
           S
Sbjct: 182 S 182


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 330 TDYVDCIEEKQAPLADINEESSD 398
           T+ +DC ++    LAD++ ESSD
Sbjct: 183 TNVMDCWQDSGVLLADLDVESSD 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,118
Number of Sequences: 5004
Number of extensions: 39554
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)