Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L21
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395...    28   4.4  
01_03_0281 - 14570635-14574633                                         27   5.8  
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334...    27   7.7  
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937...    27   7.7  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    27   7.7  
04_04_0665 - 27082142-27082480                                         27   7.7  

>07_03_1723 -
           29038701-29039213,29039341-29039413,29039504-29039594,
           29039684-29039741,29039829-29039905,29040004-29040214,
           29040339-29040386,29042496-29042608,29043270-29043341,
           29044372-29046336,29046434-29046641,29046847-29047165,
           29047813-29047937,29048024-29048157,29049089-29049164,
           29049276-29049428,29049829-29050532,29050636-29050811,
           29050945-29051107,29051199-29051341,29051802-29051914,
           29053113-29053237,29053867-29054016,29054753-29054921,
           29055201-29055418,29055499-29055709
          Length = 2135

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 300 FTKSQSEIKSTDYVDCIEEKQAPLADINEESSDNI 404
           ++ +  + K+  Y++ +E+K +P  D+ E   DN+
Sbjct: 349 WSSATDDKKTVVYLEMLEDKYSPRIDLQENGDDNV 383


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 194 PETLKHWFLCHGRSHTLSSI 135
           P T++H FLC  R  TLS +
Sbjct: 519 PNTVRHLFLCSDRPETLSDV 538


>12_01_0425 +
           3347804-3348284,3348544-3348759,3349038-3349588,
           3349752-3349815,3349915-3349975,3350271-3350409,
           3350561-3350677,3350794-3350971,3351218-3351828
          Length = 805

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 193 PKL*STGFCATGALIL*ALFTKGFGSSPSSESDTTGTVFTDNS 65
           P   S+GF ++G     A  T GFG+S S+   T+ + F+  S
Sbjct: 88  PAFGSSGFGSSGTPAFGASSTPGFGASSSASFGTSTSAFSFGS 130


>09_02_0434 +
           9365038-9366150,9367352-9368680,9368906-9370012,
           9370960-9371022
          Length = 1203

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 35  NIESNFTEGYRVVCEYGARCV 97
           NI S++ E Y+++C+  A C+
Sbjct: 761 NIRSSYNEAYKLICDLEAACL 781


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 42  NPILQKDIELSVNTVPVVS---DSEDGDEPKPFVNRAQSMRAPVAQKPVLQSFGSMRQAP 212
           N +L+ + +  ++ +P++    + E GD P    N  Q MRA   +    +S  + RQ P
Sbjct: 41  NWLLEHENDPDIDQLPLIPREINIECGDTPNEARNDIQGMRADAQESKPEESTAAGRQKP 100

Query: 213 V 215
           V
Sbjct: 101 V 101


>04_04_0665 - 27082142-27082480
          Length = 112

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 189 NSEALVFVPRALSYFELYLRKASAHHH 109
           N++A VFVP    + +LY   A+A+ H
Sbjct: 78  NADAAVFVPTTGGHQDLYTASATAYRH 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,817
Number of Sequences: 37544
Number of extensions: 248842
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)