Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_L21
         (473 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028375-1|AAH28375.1| 1154|Homo sapiens PDZ domain containing 8...    32   1.2  
AL391988-1|CAH70347.1| 1154|Homo sapiens novel protein protein.        32   1.2  
AL359836-1|CAH73253.1| 1154|Homo sapiens novel protein protein.        32   1.2  
X66397-1|CAA47021.1| 2349|Homo sapiens Tpr protein.                    30   4.7  
U69668-1|AAB48030.1| 2363|Homo sapiens Tpr protein.                    30   4.7  
AL596220-1|CAI13119.1| 2363|Homo sapiens translocated promoter r...    30   4.7  
AL133553-3|CAI17859.1| 2363|Homo sapiens translocated promoter r...    30   4.7  

>BC028375-1|AAH28375.1| 1154|Homo sapiens PDZ domain containing 8
           protein.
          Length = 1154

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +3

Query: 21  LRNLQISNPILQKDIELSVNTVPVVSDSEDGDEPKPFVNRAQSMRAPVAQKPVLQSFGSM 200
           ++ L   +P+L + + +  + +P    S+DG++P P      +  A V+ KP   + GS 
Sbjct: 531 IKPLGAISPVLNRKLAVGSHPLPPKIQSKDGNKPPPLKTSEITDPAQVS-KP---TQGSA 586

Query: 201 RQAPVTPRPVSMV 239
            + PV PRP + V
Sbjct: 587 FKPPVPPRPQAKV 599


>AL391988-1|CAH70347.1| 1154|Homo sapiens novel protein protein.
          Length = 1154

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +3

Query: 21  LRNLQISNPILQKDIELSVNTVPVVSDSEDGDEPKPFVNRAQSMRAPVAQKPVLQSFGSM 200
           ++ L   +P+L + + +  + +P    S+DG++P P      +  A V+ KP   + GS 
Sbjct: 531 IKPLGAISPVLNRKLAVGSHPLPPKIQSKDGNKPPPLKTSEITDPAQVS-KP---TQGSA 586

Query: 201 RQAPVTPRPVSMV 239
            + PV PRP + V
Sbjct: 587 FKPPVPPRPQAKV 599


>AL359836-1|CAH73253.1| 1154|Homo sapiens novel protein protein.
          Length = 1154

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +3

Query: 21  LRNLQISNPILQKDIELSVNTVPVVSDSEDGDEPKPFVNRAQSMRAPVAQKPVLQSFGSM 200
           ++ L   +P+L + + +  + +P    S+DG++P P      +  A V+ KP   + GS 
Sbjct: 531 IKPLGAISPVLNRKLAVGSHPLPPKIQSKDGNKPPPLKTSEITDPAQVS-KP---TQGSA 586

Query: 201 RQAPVTPRPVSMV 239
            + PV PRP + V
Sbjct: 587 FKPPVPPRPQAKV 599


>X66397-1|CAA47021.1| 2349|Homo sapiens Tpr protein.
          Length = 2349

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 312  QSEIKSTDYVDCIEEKQAPLADINEESSDNIYAIIEESPIRHSKPLPGVPSTV 470
            Q + ++T +V   ++    +   N+E S NI  +++ SP+        V  TV
Sbjct: 1767 QQQTQATAFVQPTQQSHPQIEPANQELSSNIVEVVQSSPVERPSTSTAVFGTV 1819


>U69668-1|AAB48030.1| 2363|Homo sapiens Tpr protein.
          Length = 2363

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 312  QSEIKSTDYVDCIEEKQAPLADINEESSDNIYAIIEESPIRHSKPLPGVPSTV 470
            Q + ++T +V   ++    +   N+E S NI  +++ SP+        V  TV
Sbjct: 1767 QQQTQATAFVQPTQQSHPQIEPANQELSSNIVEVVQSSPVERPSTSTAVFGTV 1819


>AL596220-1|CAI13119.1| 2363|Homo sapiens translocated promoter region
            (to activated MET oncogene) protein.
          Length = 2363

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 312  QSEIKSTDYVDCIEEKQAPLADINEESSDNIYAIIEESPIRHSKPLPGVPSTV 470
            Q + ++T +V   ++    +   N+E S NI  +++ SP+        V  TV
Sbjct: 1767 QQQTQATAFVQPTQQSHPQIEPANQELSSNIVEVVQSSPVERPSTSTAVFGTV 1819


>AL133553-3|CAI17859.1| 2363|Homo sapiens translocated promoter region
            (to activated MET oncogene) protein.
          Length = 2363

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 312  QSEIKSTDYVDCIEEKQAPLADINEESSDNIYAIIEESPIRHSKPLPGVPSTV 470
            Q + ++T +V   ++    +   N+E S NI  +++ SP+        V  TV
Sbjct: 1767 QQQTQATAFVQPTQQSHPQIEPANQELSSNIVEVVQSSPVERPSTSTAVFGTV 1819


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,546,732
Number of Sequences: 237096
Number of extensions: 1325773
Number of successful extensions: 3484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3484
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)